@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4222: (2016-02-25 )
MTLFERMRALPEDCRAALRRASAWAVLAALLDAACGVLLVPLVEAWFAEGALPWRWVAALLGLSLAQALLQYLALRRGFAAGGSLAAGLVRSLVARLPRLAPPALRRVAPAEGLLRGPVMQAMGIPAHLLGPLIAALVTPLGVILGLFLIDPSIALGLLLAGAFLAALLRWSGRRNLAAEDARLAAERDAARQLQAFAERQPLLRAAQRESVARQGLEEALRSLHRSTLDLLRRSLPSGLGFALAVQAAFAFALLGGAWAVERQWLDGARLVAVLVLLVRFIEPLAQLTHLDQALRGAWQALDTLLRVFALAPLRSPEPGERPHDASLAAEAVELRLEDGRALLEDISLRLEPGSLNVLVGPSGAGKSSLLALLGRLYDVDAGRVLLGGVDIRRLSETTLAASRNLVFQDNGLFRGSVAWNLRMARADADLEALREAARAVGLLEEIEAWPQGWDSDVGPGGALLSGGQRQRLCLARGLLSTAPLLLLDEPTASLDAASEAQVLRSLLGLRGRRTLLVVTHRPALARQADQVLLLEEGRLRLSGLHADLLVRDDWYAGFVGLAGEESSATVVDR

Atome Classification :

(54 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_5(2HYD)
Y1866_STAAM
[Raw transfer]



ANP_B_7(2ONJ)
Y1866_STAAM
[Raw transfer]



ADP_B_6(2HYD)
Y1866_STAAM
[Raw transfer]



ANP_A_8(2ONJ)
Y1866_STAAM
[Raw transfer]



ATP_A_2(3NH9)

[Raw transfer]



ACP_A_4(4AYT)
ABCBA_HUMAN
[Raw transfer]



ATP_A_2(4K8O)

[Raw transfer]



ATP_D_6(2IXE)

[Raw transfer]



ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]



ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]



ADP_A_2(3NHB)

[Raw transfer]



ATP_D_12(1XEF)

[Raw transfer]



ADP_A_3(3NHA)

[Raw transfer]



ATP_B_8(2IXF)
TAP1_RAT
[Raw transfer]



ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]



ATP_A_2(2IXG)

[Raw transfer]



ATP_D_15(2IXF)

[Raw transfer]



ATP_C_12(2IXF)
TAP1_RAT
[Raw transfer]



AGS_B_6(3C4J)
?
[Raw transfer]



ANP_J_5(3C41)
?
[Raw transfer]



ADP_A_3(1JJ7)

[Raw transfer]



ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]



ATP_A_5(2IXF)
TAP1_RAT
[Raw transfer]



AGS_A_4(3C4J)
?
[Raw transfer]



ACP_A_4(4AYX)
ABCBA_HUMAN
[Raw transfer]



ANP_K_6(3C41)
?
[Raw transfer]



ADP_B_6(2Q0H)
?
[Raw transfer]



ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]



ANP_A_2(4AYW)
ABCBA_HUMAN
[Raw transfer]



ADP_B_2(2FFA)

[Raw transfer]



ADP_B_2(2FF7)

[Raw transfer]



ADP_A_2(4U00)
?
[Raw transfer]



ADP_A_5(2Q0H)
?
[Raw transfer]



AT4_B_6(2OLK)
?
[Raw transfer]



AT4_D_8(2OLK)
?
[Raw transfer]



AT4_A_5(2OLK)
?
[Raw transfer]



AT4_C_7(2OLK)
?
[Raw transfer]
104 Fugue 88.7523%-103 - C1 -3B60 - MSBA_SALTY -
115 HHSearch 84.7523%-100 - C1 -3B60 - MSBA_SALTY -
116 HHSearch 81.2723%-107 - C1 -3ZDQ - ABCBA_HUMAN -
117 HHSearch 78.9521%-112 - C1 -3WMG - ? -
114 HHSearch 65.7424% -9 - C- -3B5X - MSBA_VIBCH -
111 Fugue 64.8521%-106 - C1 -4F4C - PGP1_CAEEL -
18 PsiBlast_PDB 62.6934% -86 - C1 -4MRP - ATM1_NOVAD -
20 PsiBlast_PDB 61.7734% -88 - C1 -4MRS - ATM1_NOVAD -
17 PsiBlast_PDB 60.3334% -86 - C1 -4MRN - ATM1_NOVAD -
21 PsiBlast_CBE 59.3635% -89 - C1 -3B60 - MSBA_SALTY -
23 PsiBlast_CBE 58.9035% -89 - C1 -3B60 - MSBA_SALTY -
46 PsiBlast_CBE 58.8933% -95 - C1 -3VX4 - ? -
3 PsiBlast_PDB 58.7835% -91 - C1 -3B60 - MSBA_SALTY -
22 PsiBlast_CBE 58.7235% -89 - C1 -3B60 - MSBA_SALTY -
47 PsiBlast_CBE 57.4033% -95 - C1 -3VX4 - ? -
10 PsiBlast_PDB 56.9938% -90 - C1 -2HYD 4.0 Y1866_STAAM
30 PsiBlast_CBE 56.9538% -89 - C1 -2ONJ 4.7 Y1866_STAAM
14 PsiBlast_PDB 56.8927% -98 - C1 -4Q4A - Y288_THEMA -
11 PsiBlast_PDB 56.6138% -89 - C1 -2ONJ 4.4 Y1866_STAAM
118 HHSearch 56.5634% -85 - C1 -3NH6 - -
31 PsiBlast_CBE 56.5038% -89 - C1 -2HYD 4.3 Y1866_STAAM
7 PsiBlast_PDB 55.9139% -85 - C1 -3NH9 5.6
9 PsiBlast_PDB 54.9639% -88 - C1 -3NHB 5.6
8 PsiBlast_PDB 54.1039% -88 - C1 -3NHA 5.5
69 PsiBlast_CBE 53.6836% -93 - C1 -2IXF 5.4 TAP1_RAT
71 PsiBlast_CBE 52.6836% -97 - C1 -2IXF 5.4 TAP1_RAT
33 PsiBlast_CBE 52.5539% -83 - C1 -4AYX 3.2 ABCBA_HUMAN
72 PsiBlast_CBE 52.0735% -86 - C1 -1JJ7 3.8
70 PsiBlast_CBE 51.7236% -96 - C1 -2IXF 5.5 TAP1_RAT
80 PsiBlast_CBE 51.4834% -98 - C1 -2IXG 4.5
49 PsiBlast_CBE 51.1533% -86 - C1 -2FF7 4.9
34 PsiBlast_CBE 50.8439% -82 - C1 -4AYT 3.8 ABCBA_HUMAN
65 PsiBlast_CBE 50.7433% -95 - C1 -1XEF 5.5 HLYBP_ECOLX
68 PsiBlast_CBE 50.7136% -95 - C1 -2IXF 5.5
79 PsiBlast_CBE 50.6835% -92 - C1 -4K8O 4.4
62 PsiBlast_CBE 50.5533% -89 - C1 -2FGJ 5.3 HLYBP_ECOLX
100 PsiBlast_CBE 50.0333% -89 - C1 -2OLK 3.4 ?
103 PsiBlast_CBE 49.7233% -92 - C1 -2OLK 3.2 ?
101 PsiBlast_CBE 49.2633% -93 - C1 -2OLK 4.2 ?
66 PsiBlast_CBE 49.1833% -95 - C1 -1XEF 5.6 HLYBP_ECOLX
74 PsiBlast_CBE 48.9935% -89 - C1 -2IXE 5.4 TAP1_RAT
92 PsiBlast_CBE 48.9433% -93 - C1 -3C4J 3.2 ?
63 PsiBlast_CBE 48.8833% -85 - C1 -2FFA 5.0
64 PsiBlast_CBE 48.5833% -92 - C1 -1XEF 5.4
40 PsiBlast_CBE 48.5539% -84 - C1 -4AYW 3.4 ABCBA_HUMAN
102 PsiBlast_CBE 48.5233% -88 - C1 -2OLK 3.4 ?
61 PsiBlast_CBE 48.4033% -87 - C1 -2FGJ 5.7 HLYBP_ECOLX
73 PsiBlast_CBE 48.3335%-100 - C1 -2IXE 4.9
95 PsiBlast_CBE 47.6733% -90 - C1 -2Q0H 3.3 ?
93 PsiBlast_CBE 47.4933% -91 - C1 -3C4J 4.6 ?
90 PsiBlast_CBE 47.3733% -92 - C1 -3C41 3.7 ?
91 PsiBlast_CBE 46.6033% -91 - C1 -3C41 3.8 ?
94 PsiBlast_CBE 45.9433% -94 - C1 -2Q0H 4.0 ?
89 PsiBlast_CBE 44.7133% -80 - C1 -4U00 4.3 ?