@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4223: (2016-02-25 )
MTPVLWRLLRTYRWRLAAAMGLQALAGLCSLLPWMLLAWLAEPLARGQAQPALLALVLLAVLAWLGCQALAAHLAHRVDADLCNDLRLRLLAHLQRLPLDWFGRQGPDGVARLVEQDVRALHQLIAHAPNDLSNLLVVPLVALLWLAWLHPWLLLFCLLPLVLAAAGFLLLRSARYRDLVLRRNAALERLSADYGEFAHNLLLARQYPGAGIQQGAEASAAAFGEAFGAWVKRVGHLAALVYVQLSTPWLLAWVLLGALALDALGVPLALGQACAFLLLLRALAAPVQALGHGGDALLGARAAAERLQQVFDQAPLAEGRSTREPVDGAVALHGLGHAYEGVEVLADIDLELEDGSLVALVGPSGSGKSTLLHLLARYMDAQRGELEVGGLALKDMPDAVRHRHIALVGQQAAALEISLADNIALFRPDADLQEIRQAARDACLDERIMALPRGYDSVPGRDLQLSGGELQRLALARALLSPASLLLLDEPTSALDPQTARQVLRNLRERGGGRTRVIVAHRLAEVSDADLILVLVAGRLVERGEHAALLAADGAYARLWREQNGAEVAA

Atome Classification :

(71 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_8(2ONJ)
Y1866_STAAM
[Raw transfer]



ATP_A_3(2CBZ)

[Raw transfer]



ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]



AGS_B_6(3C4J)
?
[Raw transfer]



ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]



ANP_J_5(3C41)
?
[Raw transfer]



ATP_D_5(3VX4)
?
[Raw transfer]



ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]



ATP_H_8(2FGK)

[Raw transfer]



ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]



ATP_A_2(4K8O)

[Raw transfer]



ADP_A_3(3NHA)

[Raw transfer]



ADP_A_5(2HYD)
Y1866_STAAM
[Raw transfer]



ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]



ADP_A_2(3NHB)

[Raw transfer]



ATP_A_2(2IXG)

[Raw transfer]



ANP_K_6(3C41)
?
[Raw transfer]



ATP_D_15(2IXF)

[Raw transfer]



ADP_A_3(1JJ7)

[Raw transfer]



ATP_H_8(2FGJ)

[Raw transfer]



ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]



ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]



ADP_B_8(1MV5)
LMRA_LACLA
[Raw transfer]



ATP_D_6(2IXE)

[Raw transfer]



ATP_C_12(2IXF)
TAP1_RAT
[Raw transfer]



AGS_A_4(3C4J)
?
[Raw transfer]



ATP_B_8(2IXF)
TAP1_RAT
[Raw transfer]



ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]



ATP_A_3(3VX4)
?
[Raw transfer]



ATP_A_5(2IXF)
TAP1_RAT
[Raw transfer]



ADP_A_2(5DGX)
?
[Raw transfer]



ATP_D_12(1XEF)

[Raw transfer]



ATP_A_3(3VX4)
?
[Raw transfer]



ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]



ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]



ADP_D_10(1MV5)

[Raw transfer]



ADP_B_2(2FFB)

[Raw transfer]



128_A_2(2PMK)

[Raw transfer]



ATP_A_2(3NH9)

[Raw transfer]



ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]



ADP_A_5(2Q0H)
?
[Raw transfer]



ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]



ADP_B_6(2OLJ)
?
[Raw transfer]



ADP_B_2(2FFA)

[Raw transfer]



ADP_B_6(2Q0H)
?
[Raw transfer]



12D_A_2(3B5J)

[Raw transfer]



ADP_A_2(4U00)
?
[Raw transfer]



ADP_B_2(2FF7)

[Raw transfer]



AT4_D_8(2OLK)
?
[Raw transfer]



ADP_A_5(2OLJ)
?
[Raw transfer]



AT4_B_6(2OLK)
?
[Raw transfer]



AT4_A_5(2OLK)
?
[Raw transfer]



AT4_C_7(2OLK)
?
[Raw transfer]
2 PsiBlast_PDB 88.8026%-120 - C1 -2HYD 4.5 Y1866_STAAM
3 PsiBlast_PDB 88.7026%-120 - C1 -2ONJ 6.0 Y1866_STAAM
116 HHSearch 87.2326%-125 - C1 -3ZDQ - ABCBA_HUMAN -
117 HHSearch 82.7725%-123 - C1 -3WMG - ? -
104 Fugue 82.0024%-111 - C1 -3B60 - MSBA_SALTY -
115 HHSearch 81.6624%-113 - C1 -3B60 - MSBA_SALTY -
6 PsiBlast_PDB 81.3327%-123 - C1 -3QF4 - Y288_THEMA -
7 PsiBlast_PDB 80.1127%-122 - C1 -4Q4A - Y288_THEMA -
8 PsiBlast_PDB 80.0327%-117 - C1 -4Q4H - Y288_THEMA -
107 Fugue 79.8724%-128 - C1 -4F4C - PGP1_CAEEL -
16 PsiBlast_PDB 79.4726%-118 - C1 -4Q4J - Y288_THEMA -
18 PsiBlast_PDB 77.4826%-115 - C1 -4RY2 - ? -
4 PsiBlast_PDB 77.2326%-119 - C1 -4A82 - Y1866_STAAM -
11 PsiBlast_PDB 76.4027%-107 - C1 -3B60 - MSBA_SALTY -
20 PsiBlast_PDB 73.5725%-101 - C1 -4S0F - ? -
114 HHSearch 59.4227% -34 - C- -3B5X - MSBA_VIBCH -
1 PsiBlast_PDB 57.3027% -29 - C- -3B5X - MSBA_VIBCH -
17 PsiBlast_PDB 55.8436% -92 - C1 -4F4C - PGP1_CAEEL -
118 HHSearch 55.1536% -84 - C1 -3NH6 - -
12 PsiBlast_PDB 55.1241% -91 - C1 -3NH6 - -
15 PsiBlast_PDB 54.9141% -93 - C1 -3NHB 6.5
14 PsiBlast_PDB 54.2241% -91 - C1 -3NHA 6.4
13 PsiBlast_PDB 53.2241% -89 - C1 -3NH9 6.2
58 PsiBlast_CBE 51.9434% -91 - C1 -2IXF 7.5 TAP1_RAT
122 HHSearch 51.4334% -90 - C1 -2IXE 7.3 TAP1_RAT
57 PsiBlast_CBE 51.2434% -90 - C1 -2IXF 7.7 TAP1_RAT
48 PsiBlast_CBE 51.1737%-103 - C1 -1XEF 5.3 HLYBP_ECOLX
23 PsiBlast_CBE 51.1335% -97 - C1 -3VX4 6.5 ?
42 PsiBlast_CBE 51.0537%-107 - C1 -2FGJ 5.1
120 HHSearch 50.7735% -95 - C1 -3VX4 6.8 ?
47 PsiBlast_CBE 50.7437% -99 - C1 -1XEF 5.3
69 PsiBlast_CBE 50.6734% -93 - C1 -4K8O 6.8
59 PsiBlast_CBE 50.5534% -92 - C1 -2IXF 7.5 TAP1_RAT
24 PsiBlast_CBE 50.4335% -94 - C1 -3VX4 6.9 ?
56 PsiBlast_CBE 50.4234% -90 - C1 -2IXF 7.7
50 PsiBlast_CBE 50.2137%-102 - C1 -1XEF 4.9 HLYBP_ECOLX
49 PsiBlast_CBE 50.2037%-101 - C1 -1XEF 5.6 HLYBP_ECOLX
29 PsiBlast_CBE 50.1138%-100 - C1 -2FF7 4.8
45 PsiBlast_CBE 49.5437%-100 - C1 -2FGJ 5.2 HLYBP_ECOLX
70 PsiBlast_CBE 49.5033% -95 - C1 -2IXG 6.8
44 PsiBlast_CBE 49.3137%-101 - C1 -2FGJ 5.5 HLYBP_ECOLX
34 PsiBlast_CBE 49.3137% -99 - C1 -2FGK 5.4 HLYBP_ECOLX
55 PsiBlast_CBE 49.2436% -92 - C1 -1JJ7 6.2
32 PsiBlast_CBE 49.0837%-101 - C1 -2FGK 5.4
43 PsiBlast_CBE 48.9937% -99 - C1 -2FGJ 5.3 HLYBP_ECOLX
31 PsiBlast_CBE 48.6738%-102 - C1 -2PMK 4.9
62 PsiBlast_CBE 48.4434% -87 - C1 -2IXE 7.3 TAP1_RAT
61 PsiBlast_CBE 48.4334% -98 - C1 -2IXE 7.1
33 PsiBlast_CBE 48.2137% -97 - C1 -2FGK 5.2 HLYBP_ECOLX
38 PsiBlast_CBE 47.6034% -95 - C1 -5DGX 6.6 ?
36 PsiBlast_CBE 47.6037% -98 - C1 -2FFB 4.7
35 PsiBlast_CBE 47.5837% -97 - C1 -2FGK 5.6 HLYBP_ECOLX
37 PsiBlast_CBE 47.2537% -96 - C1 -3B5J 5.0
46 PsiBlast_CBE 47.1937% -98 - C1 -2FFA 4.8
81 PsiBlast_CBE 44.3631%-103 - C1 -2OLK 6.4 ?
60 PsiBlast_CBE 42.7833% -93 - C1 -2CBZ 6.2
74 PsiBlast_CBE 42.6531% -97 - C1 -3C4J 6.9 ?
72 PsiBlast_CBE 42.0231%-101 - C1 -3C41 6.1 ?
71 PsiBlast_CBE 42.0131%-101 - C1 -3C41 6.0 ?
83 PsiBlast_CBE 41.7031%-103 - C1 -2OLK 6.3 ?
73 PsiBlast_CBE 41.6231%-101 - C1 -3C4J 5.4 ?
85 PsiBlast_CBE 41.5531% -99 - C1 -2OLJ 5.9 ?
86 PsiBlast_CBE 41.4031%-101 - C1 -2OLJ 5.9 ?
82 PsiBlast_CBE 41.3231%-101 - C1 -2OLK 5.2 ?
76 PsiBlast_CBE 41.1831% -95 - C1 -2Q0H 5.7 ?
67 PsiBlast_CBE 41.1434% -89 - C1 -4U00 6.2 ?
84 PsiBlast_CBE 39.7931%-102 - C1 -2OLK 6.2 ?
54 PsiBlast_CBE 39.7532% -78 - C1 -1MV5 6.4 LMRA_LACLA
53 PsiBlast_CBE 39.6432% -71 - C1 -1MV5 6.3 LMRA_LACLA
51 PsiBlast_CBE 39.5132% -81 - C1 -1MV5 4.9
75 PsiBlast_CBE 39.3131% -99 - C1 -2Q0H 6.1 ?