@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4269: (2016-02-25 )
MKDLLNLLKNQGQIEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMGHIELASPVAHIWFLKSLPSRIGLLLDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARMGAEAVHELLNAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNKPEWMVLTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPTLRLHQCGLPKKMALELFKPFIFGKLEGRGMATTIKAAKKMVERELPEVWDVLAEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVMGLYYMTREAINAKGEGMAFADLQEVDRAYRSGQASLHARVKVRINEKIKGEDGQLTANTRIVDTTVGRALLFQVVPAGLPFDVVNQSMKKKAISKLINHCYRVVGLKDTVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIINAATDEVKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVVDREGKEVDQESFNSMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLLMSPHIEGGDVVEPLGERVLGRVIARDVFKPGSDEVIVPAGTLIDEKWVDFLEVMSVDEVVVRSPITCETRHGICAMCYGRDLARGHRVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADNVQVKNGGTIRLHNLKHVVRADGALVAVSRSGELAVADDFGRERERYKLPYGAVISVKEGDKVDPGAIVAKWDPHTHPIVTEVDGTVAFVGMEEGITVKRQTDELTGLTNIEVMDPKDRPAAGKDIRPAVKLIDAAGKDLLLPGTDVPAQYFLPANALVNLTDGAKVSIGDVVARIPQETSKTRDITGGLPRVADLFEARRPKEPSILAEISGTISFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFEGEQVNRGEVISDGPSNPHDILRLLGVSSLAKYIVNEIQDVYRLQGVKINDKHIETILRQMLRKVEVSESGDSSFIKGDQVELTQVLEENEQLGTEDKFPAKYERVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDFLRGLKENVVVGRLIPAGTGLAYHSERKRQRDLGKPQRVSASEAEAALTEALNSSGN

Atome Classification :

(40 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_I_9(4YLN)
RPOC_ECOLI
[Raw transfer]
-
NACID_R_18(4YLN)
RPOC_ECOLI
[Raw transfer]
-
NACID_U_21(3AOI)
RPOC_THET8
[Raw transfer]
-
NACID_Q_16(4G7O)
RPOC_THET8
[Raw transfer]
-
NACID_G_7(4G7O)
RPOC_THET8
[Raw transfer]
-
NACID_X_4(2PPB)
RPOC_THET8
[Raw transfer]
-
NACID_I_9(4YLO)
RPOC_ECOLI
[Raw transfer]
-
NACID_I_9(4YLP)
RPOC_ECOLI
[Raw transfer]
-
NACID_R_18(4YLP)
RPOC_ECOLI
[Raw transfer]
-
NACID_S_19(3AOI)
RPOC_THET8
[Raw transfer]
-
NACID_R_18(4YLO)
RPOC_ECOLI
[Raw transfer]
-
NACID_G_7(4OIP)
RPOC_THET8
[Raw transfer]
-
NACID_Q_17(3AOI)
RPOC_THET8
[Raw transfer]
-
NACID_G_14(4G7Z)
RPOC_THET8
[Raw transfer]
-
NACID_G_1(2O5I)
RPOC_THET8
[Raw transfer]
-
NACID_M_13(4S20)
?
[Raw transfer]
-
NACID_O_15(4S20)
?
[Raw transfer]
-
NACID_Y_15(4WQS)
RPOC_THET8
[Raw transfer]
-
NACID_G_1(2PPB)
RPOC_THET8
[Raw transfer]
-
NACID_G_7(4OIN)
RPOC_THET8
[Raw transfer]
-
NACID_Q_15(4G7H)
RPOC_THET8
[Raw transfer]
-
NACID_G_7(4OIR)
RPOC_THET8
[Raw transfer]
-
NACID_G_7(4G7H)
RPOC_THET8
[Raw transfer]
-
NACID_G_7(4OIQ)
RPOC_THET8
[Raw transfer]
-
NACID_X_4(2O5I)
RPOC_THET8
[Raw transfer]
-
NACID_Q_16(4G7Z)
RPOC_THET8
[Raw transfer]
-
NACID_G_7(4Q5S)
RPOC_THET8
[Raw transfer]
-
NACID_G_7(4OIO)
RPOC_THET8
[Raw transfer]
-
23 PsiBlast_CBE 83.7875% -84 - C6 -4YLN Error RPOC_ECOLI
9 PsiBlast_PDB 83.7475% -84 - C6 -4YLN Error RPOC_ECOLI
10 PsiBlast_PDB 83.3275% -81 - C6 -4YLO Error RPOC_ECOLI
11 PsiBlast_PDB 83.2075% -82 - C6 -4YLP Error RPOC_ECOLI
21 PsiBlast_CBE 82.8075% -82 - C6 -4YLP Error RPOC_ECOLI
13 PsiBlast_PDB 82.6175% -86 - C6 -4JKR - ? -
22 PsiBlast_CBE 82.5475% -80 - C6 -4YLO Error RPOC_ECOLI
34 PsiBlast_CBE 82.4775% -85 - C6 -4JKR - ? -
12 PsiBlast_PDB 82.1275% -75 - C6 -5BYH - ? -
1 PsiBlast_PDB 80.6875% -74 - C6 -3IYD - RPOC_ECOLI -
2 PsiBlast_PDB 78.9075% -71 - C6 -3LU0 - RPOC_ECOLI -
24 PsiBlast_CBE 76.5275% -88 - C6 -4YG2 - RPOZ_ECOLI -
8 PsiBlast_PDB 76.0075% -86 - C6 -4MEX - RPOC_ECOLI -
26 PsiBlast_CBE 75.8475% -89 - C6 -4YFN - RPOC_ECO24 -
33 PsiBlast_CBE 75.3275% -83 - C6 -4S20 Error ?
27 PsiBlast_CBE 75.2375% -88 - C6 -4MEX - RPOC_ECOLI -
14 PsiBlast_PDB 75.0275% -83 - C6 -4S20 Error ?
5 PsiBlast_PDB 74.9875% -76 - C6 -4KMU - RPOC_ECOLI -
28 PsiBlast_CBE 74.9475% -78 - C6 -4KN7 - RPOC_ECOLI -
30 PsiBlast_CBE 74.9075% -78 - C6 -4KMU - RPOC_ECOLI -
39 PsiBlast_CBE 70.8049% -83 - C6 -4OIR 5.2 RPOC_THET8
43 PsiBlast_CBE 70.3749% -83 - C6 -4OIN 5.1 RPOC_THET8
51 PsiBlast_CBE 69.9649% -81 - C6 -4G7H 5.2 RPOC_THET8
48 PsiBlast_CBE 69.8749% -82 - C6 -4G7O 4.3 RPOC_THET8
41 PsiBlast_CBE 69.7449% -83 - C6 -4OIP 6.0 RPOC_THET8
50 PsiBlast_CBE 69.6849% -82 - C6 -4G7H 5.1 RPOC_THET8
49 PsiBlast_CBE 69.5049% -83 - C6 -4G7O 4.9 RPOC_THET8
42 PsiBlast_CBE 69.4449% -82 - C6 -4OIO 5.9 RPOC_THET8
40 PsiBlast_CBE 69.4349% -83 - C6 -4OIQ 5.3 RPOC_THET8
46 PsiBlast_CBE 68.6549% -83 - C6 -4G7Z 5.3 RPOC_THET8
38 PsiBlast_CBE 68.4649% -82 - C6 -4Q5S 6.8 RPOC_THET8
59 PsiBlast_CBE 67.7249% -84 - C6 -3AOI 2.5 RPOC_THET8
47 PsiBlast_CBE 67.6349% -82 - C6 -4G7Z 4.9 RPOC_THET8
57 PsiBlast_CBE 67.4149% -85 - C6 -3AOI 2.4 RPOC_THET8
64 PsiBlast_CBE 66.8149% -84 - C6 -2O5I 5.0 RPOC_THET8
58 PsiBlast_CBE 66.7249% -86 - C6 -3AOI 2.2 RPOC_THET8
62 PsiBlast_CBE 66.4949% -85 - C6 -2PPB 3.8 RPOC_THET8
63 PsiBlast_CBE 66.3849% -85 - C6 -2O5I 4.9 RPOC_THET8
61 PsiBlast_CBE 66.2349% -84 - C6 -2PPB 4.2 RPOC_THET8
37 PsiBlast_CBE 61.0749% -78 - C6 -4WQS 2.6 RPOC_THET8