@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4270: (2016-02-25 )
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKEQFRDVGLHAAFKSVFPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDRESSNKAIKDIKEQEVYMGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEILNAFYATNVFHIKGETLNLELVPQRLRGEVASIDIKDGSGKVIVEQGRRITARHINQLEKAGVSQLEVPFDYLIGRTIAKAIVHPATGEIIAECNTELTLDLLAKVAKAQVVRIETLYTNDIDCGPFISDTLKIDNTSNQLEALVEIYRMMRPGEPPTKEAAETLFGNLFFSAERYDLSAVGRMKFNRRIGRTEIEGPGVLSKEDIIDVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAVKERLSMAESEGLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNKYGFLESPYRVVKDSLVTDEIVFLSAIEEADHVIAQASATLNEKGQLVDELVAVRHLNEFTVKAPEDVTLMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVCVVARRGGVIDSVDASRVVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGDVVARGDILADGPSTDMGELALGQNMRVAFMPWNGFNFEDSICLSERVVQEDRFTTIHIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVQAGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALSIEKMQLDQIRKDLNEEFRIVEGATFERLRAALVGAKAEGGPALKKGTEITDDYLDGLERGQWFKLRMADDALNEQLEKAQAYISDRRQLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIKRRIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKGLGEKINRMLEEQRKVAELRKFLHEIYNEIGGREENLDELGDNEILALAKNLRGGVPMATPVFDGAKEREIKAMLKLADLPESGQMRLFDGRTGNQFERPTTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEAGMPESFNVLIKEIRSLGIDIELETE

Atome Classification :

(46 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_G_7(4OIQ)
RPOB_THET8
[Raw transfer]
-
NACID_G_1(2O5I)
RPOB_THET8
[Raw transfer]
-
NACID_X_4(2O5I)
RPOB_THET8
[Raw transfer]
-
NACID_G_1(2PPB)
RPOB_THET8
[Raw transfer]
-
NACID_I_13(4WQS)
RPOB_THET8
[Raw transfer]
-
NACID_X_4(2O5J)
RPOB_THET8
[Raw transfer]
-
NACID_H_8(4OIO)
RPOB_THET8
[Raw transfer]
-
NACID_H_13(4G7Z)
RPOB_THET8
[Raw transfer]
-
NACID_H_8(4OIP)
RPOB_THET8
[Raw transfer]
-
NACID_H_8(4Q5S)
RPOB_THET8
[Raw transfer]
-
NACID_H_8(4G7H)
RPOB_THET8
[Raw transfer]
-
CHAIN_H_8(4Q4Z)
RPOB_THET8
[Raw transfer]
-
CHAIN_I_7(4MQ9)
RPOB_THET8
[Raw transfer]
-
NACID_H_8(4OIR)
RPOB_THET8
[Raw transfer]
-
NACID_H_8(4G7O)
RPOB_THET8
[Raw transfer]
-
NACID_H_8(4OIQ)
RPOB_THET8
[Raw transfer]
-
NACID_H_8(4OIN)
RPOB_THET8
[Raw transfer]
-
NACID_Q_15(4G7H)
RPOB_THET8
[Raw transfer]
-
NACID_X_4(2PPB)
RPOB_THET8
[Raw transfer]
-
NACID_G_1(2O5J)
RPOB_THET8
[Raw transfer]
-
NACID_Z_16(4WQS)
RPOB_THET8
[Raw transfer]
-
NACID_R_17(4G7O)
RPOB_THET8
[Raw transfer]
-
NACID_U_21(3AOI)
RPOB_THET8
[Raw transfer]
-
NACID_R_16(4G7H)
RPOB_THET8
[Raw transfer]
-
NACID_R_15(4G7Z)
RPOB_THET8
[Raw transfer]
-
NACID_Q_17(3AOI)
RPOB_THET8
[Raw transfer]
-
NACID_Q_17(3AOH)
RPOB_THET8
[Raw transfer]
-
NACID_S_19(3AOI)
RPOB_THET8
[Raw transfer]
-
11 PsiBlast_PDB 87.0173% -79 - C5 -4LLG - ? -
17 PsiBlast_PDB 86.7973% -79 - C5 -4YG2 - RPOB_ECOLI -
30 PsiBlast_CBE 86.7273% -79 - C5 -4YG2 - RPOC_ECOLI -
13 PsiBlast_PDB 86.5373% -78 - C5 -4MEY - RPOB_ECOLI -
10 PsiBlast_PDB 86.5273% -79 - C5 -4LK1 - ? -
24 PsiBlast_CBE 86.5073% -79 - C5 -4ZH3 - ? -
25 PsiBlast_CBE 86.4773% -79 - C5 -4ZH2 - ? -
15 PsiBlast_PDB 86.4673% -81 - C5 -4YFN - RPOB_ECO24 -
23 PsiBlast_CBE 86.4573% -79 - C5 -4ZH3 - ? -
22 PsiBlast_CBE 86.4573% -79 - C5 -4ZH4 - ? -
31 PsiBlast_CBE 86.4473% -81 - C5 -4YFN - RPOB_ECO24 -
32 PsiBlast_CBE 86.4273% -79 - C5 -4YFK - RPOB_ECO24 -
21 PsiBlast_CBE 86.4073% -78 - C5 -4ZH4 - ? -
9 PsiBlast_PDB 86.4073% -81 - C5 -4LK0 - ? -
36 PsiBlast_CBE 86.3773% -79 - C5 -4XSY - ? -
37 PsiBlast_CBE 86.3573% -81 - C5 -4XSX - ? -
26 PsiBlast_CBE 86.3473% -79 - C5 -4ZH2 - ? -
35 PsiBlast_CBE 86.3373% -79 - C5 -4XSY - ? -
8 PsiBlast_PDB 86.2773% -79 - C5 -4LJZ - ? -
12 PsiBlast_PDB 86.2473% -77 - C5 -4MEX - RPOB_ECOLI -
49 PsiBlast_CBE 58.6651% -52 - C5 -4OIQ 3.9 RPOB_THET8
60 PsiBlast_CBE 58.1751% -49 - C5 -4G7H 4.2 RPOB_THET8
59 PsiBlast_CBE 58.0551% -49 - C5 -4G7O 5.3 RPOB_THET8
58 PsiBlast_CBE 58.0251% -48 - C5 -4G7O 4.1 RPOB_THET8
52 PsiBlast_CBE 57.8651% -51 - C5 -4OIN 4.7 RPOB_THET8
50 PsiBlast_CBE 57.8551% -49 - C5 -4OIP 3.8 RPOB_THET8
56 PsiBlast_CBE 57.7851% -49 - C5 -4G7Z 4.0 RPOB_THET8
61 PsiBlast_CBE 57.7751% -50 - C5 -4G7H 3.9 RPOB_THET8
48 PsiBlast_CBE 57.6551% -49 - C5 -4OIR 4.6 RPOB_THET8
47 PsiBlast_CBE 57.6051% -50 - C5 -4Q4Z 3.2 RPOB_THET8
53 PsiBlast_CBE 57.4851% -50 - C5 -4MQ9 4.3 RPOB_THET8
51 PsiBlast_CBE 57.4751% -49 - C5 -4OIO 3.6 RPOB_THET8
57 PsiBlast_CBE 57.2551% -48 - C5 -4G7Z 4.1 RPOB_THET8
46 PsiBlast_CBE 56.6251% -47 - C5 -4Q5S 3.9 RPOB_THET8
66 PsiBlast_CBE 55.3951% -45 - C5 -3AOI 1.9 RPOB_THET8
69 PsiBlast_CBE 55.2951% -41 - C5 -3AOH 2.7 RPOB_THET8
74 PsiBlast_CBE 55.2051% -41 - C5 -2O5I 2.1 RPOB_THET8
75 PsiBlast_CBE 55.1951% -41 - C5 -2O5I 2.4 RPOB_THET8
72 PsiBlast_CBE 54.8051% -40 - C5 -2O5J 2.7 RPOB_THET8
68 PsiBlast_CBE 54.7051% -43 - C5 -3AOI 2.4 RPOB_THET8
70 PsiBlast_CBE 54.3951% -37 - C5 -2PPB 2.6 RPOB_THET8
44 PsiBlast_CBE 54.3551% -39 - C5 -4WQS 4.2 RPOB_THET8
71 PsiBlast_CBE 54.3351% -40 - C5 -2PPB 2.4 RPOB_THET8
73 PsiBlast_CBE 54.1851% -39 - C5 -2O5J 2.7 RPOB_THET8
45 PsiBlast_CBE 53.9951% -39 - C5 -4WQS 3.4 RPOB_THET8
67 PsiBlast_CBE 53.6251% -41 - C5 -3AOI 1.9 RPOB_THET8