@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4316: (2016-02-26 )
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLKLEMLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVVLPLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRAEDRQRTGIELDECQQKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNVAERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_A_4(1FXX)
EX1_ECOLI
[Raw transfer]



DMS_A_6(3HP9)
EX1_ECOLI
[Raw transfer]



IPA_B_16(4HCC)
EX1_ECOLI
[Raw transfer]



GOL_A_4(1FXX)
EX1_ECOLI
[Raw transfer]



NACID_D_4(4HCC)
EX1_ECOLI
[Raw transfer]
-
CHAIN_C_1(4JS4)
EX1_ECOLI
[Raw transfer]
-
DMS_A_8(3HP9)
EX1_ECOLI
[Raw transfer]



NACID_D_4(4HCB)
EX1_ECOLI
[Raw transfer]
-
NACID_C_3(4HCB)
EX1_ECOLI
[Raw transfer]
-
CHAIN_D_2(4JRP)
EX1_ECOLI
[Raw transfer]
-
41 Fugue 99.8848% -98 - C7 -1FXX 2.7 EX1_ECOLI
16 PsiBlast_CBE 94.8850% -95 - C7 -4HCC 23.7 EX1_ECOLI
3 PsiBlast_PDB 94.8050% -95 - C7 -4JS4 30.6 EX1_ECOLI
18 PsiBlast_CBE 94.6750% -95 - C7 -4JRP 19.9 EX1_ECOLI
2 PsiBlast_PDB 94.5150% -96 - C7 -4HCB 20.4 EX1_ECOLI
17 PsiBlast_CBE 94.3550% -95 - C7 -4HCB 21.6 EX1_ECOLI
4 PsiBlast_PDB 93.6050% -97 - C7 -3C94 - EX1_ECOLI -
1 PsiBlast_PDB 93.4550% -94 - C7 -4HCC - EX1_ECOLI -
6 PsiBlast_PDB 92.4950% -98 - C7 -3HP9 3.6 EX1_ECOLI
5 PsiBlast_PDB 91.2950% -97 - C7 -3C95 - EX1_ECOLI -
42 Fugue 63.4857% -75 - C7 -1FXX 2.6 EX1_ECOLI
49 Fugue 46.5819% -52 - C4 -4XGC - ? -
33 HHSearch 43.1825% -42 - C7 -2GBZ - ORN_XANCP -
29 HHSearch 42.7122% -42 - C7 -2IGI - ORN_ECOLI -
32 HHSearch 42.5219% -43 - C7 -3U3Y - TREX1_MOUSE -
30 HHSearch 41.7019% -47 - C7 -3V9W - RNT_ECOLI -
35 HHSearch 41.6914% -55 - C7 -3CG7 - CRN4_CAEEL -
10 PsiBlast_PDB 41.5224% -43 - C7 -5CY4 - ? -
27 HHSearch 41.1719% -39 - C7 -3MXM - TREX1_MOUSE -
22 HHSearch 41.1216% -45 - C7 -1W0H - ERI1_HUMAN -