@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4358: (2016-02-26 )
MTALTLGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGAFHTVRHAVRLVDLPGTYSLTSVSAQASLDEQIACRYIASGEVDVLVNVVDAANLERNLYLTVQLREMGIPCIVALNMLDIARSQRIRIDIDGLARRLGCPVVPLVSTRADGIDELKAAIDSLQLPQAALAVDYPPAIQAQVGYLLETRAPAASAIEPRWLALQALEGDIFNGPALGLPPATLEQARRGCGEEPELAIVDARYRLIGEICAAVCDHQQAQPHRLTQWLDRVVLNRWLGLPIFLLVMYLMFFFAINIGGALQPIFDKGSSAIFIDGIQWLGIRFGLPDWLTVFLAQGIGGGVNTVLPLVPQIGLMYLFLSLLEDSGYMARAAFVMDRLMQALGLPGKSFVPLIVGFGCNVPSIMGARTLDAQRERLITIMMAPFMSCGARLAIFAVFAGAFFGQGGALVIFSLYLLGIVVAILTGLLLKHTLMRGEASPFVMELPLYHVPHLKSLLLQTWSRLRGFVVRAGKVIILVSLVIGGLNSITLDGKPVQGDIGHSALASVSQRLTPLLAPLGVQPDNWQATVGLVTGAMAKEVVVGTLNTLYTAEQIQGEAFDYEGYDLPGQLREALVETWDGLVDTFSLSVLANPVEASMADGDMETGSMGTMASKFGSPIAAYSYLVFVLLYVPCVTAMGAIARESSKGWMAFSVLWGLNVAYSLATLCYQVATFAAHPERSVLTIAVVLLFNLILMTCLRLFGREQVLQLPGRMADAPSGQGGCH

Atome Classification :

(51 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GNP_B_7(3A1U)
?
[Raw transfer]



GDP_A_3(3SS8)
?
[Raw transfer]



AGO_C_8(3HYT)
FEOB_ECOLI
[Raw transfer]



AGO_A_2(3LX5)
?
[Raw transfer]



GNP_A_2(2WIC)
?
[Raw transfer]



GNP_A_3(2WJI)
FEOB_METJA
[Raw transfer]



GNP_A_3(2WJI)
FEOB_METJA
[Raw transfer]



GDP_A_4(2WJG)
FEOB_METJA
[Raw transfer]



GGM_A_2(3B1V)
?
[Raw transfer]



GGM_A_2(3B1V)
?
[Raw transfer]



GDP_B_7(3SS8)
?
[Raw transfer]



GDP_A_4(2WJG)
FEOB_METJA
[Raw transfer]



GDP_B_4(2WIB)
?
[Raw transfer]



GNP_B_5(3B1X)
?
[Raw transfer]



GNP_A_3(3B1X)
?
[Raw transfer]



GNH_A_2(3B1Y)
?
[Raw transfer]



GDP_A_3(2WJJ)
FEOB_METJA
[Raw transfer]



GDP_B_5(3I8X)
FEOB_ECOLI
[Raw transfer]



GNP_B_5(2WJI)
FEOB_METJA
[Raw transfer]



GDP_C_7(3B1W)
?
[Raw transfer]



GCP_B_7(3I92)
FEOB_ECOLI
[Raw transfer]



GDP_B_6(3B1W)
?
[Raw transfer]



GDP_A_2(3LX8)
?
[Raw transfer]



AGO_A_4(3HYT)
FEOB_ECOLI
[Raw transfer]



BGO_B_6(3TAH)
?
[Raw transfer]



GDP_A_3(2WJH)
FEOB_METJA
[Raw transfer]



GDP_B_5(2WJG)
FEOB_METJA
[Raw transfer]



GDP_D_8(3B1W)
?
[Raw transfer]



AGO_B_6(3HYT)
FEOB_ECOLI
[Raw transfer]



GDP_C_6(3I8X)
FEOB_ECOLI
[Raw transfer]



GDP_A_5(3B1W)
?
[Raw transfer]



GDP_A_3(4NON)
?
[Raw transfer]



GDP_B_4(4NON)
?
[Raw transfer]



GCP_A_5(3I92)
FEOB_ECOLI
[Raw transfer]



BGO_A_3(3TAH)
?
[Raw transfer]



GNP_B_7(3A1U)
?
[Raw transfer]



GCP_C_9(3I92)
FEOB_ECOLI
[Raw transfer]



GDP_A_2(3A1T)
?
[Raw transfer]



GDP_A_3(3W5J)
?
[Raw transfer]



GDP_A_3(3W5J)
?
[Raw transfer]



FLC_B_6(2WJH)
FEOB_METJA
[Raw transfer]



GNH_A_3(4R98)
FEOB_ECOLI
[Raw transfer]



GDP_B_4(2WIB)
?
[Raw transfer]
2 PsiBlast_PDB 91.6159%-105 - C9 -3I92 5.9 FEOB_ECOLI
82 Fugue 91.0860%-108 - C9 -3I8S - FEOB_ECOLI -
1 PsiBlast_PDB 91.0859%-100 - C9 -3I8S - FEOB_ECOLI -
61 HHSearch 90.8660%-101 - C9 -3I8S - FEOB_ECOLI -
24 PsiBlast_CBE 90.6259%-103 - C9 -3I8X 7.1 FEOB_ECOLI
22 PsiBlast_CBE 90.2559% -99 - C9 -3I92 7.2 FEOB_ECOLI
8 PsiBlast_PDB 89.7858% -99 - C9 -4Q5I - FEOB_ECOLI -
4 PsiBlast_PDB 89.3959% -97 - C9 -2WIB 3.2 ?
3 PsiBlast_PDB 89.3959%-109 - C9 -2WIA - ? -
21 PsiBlast_CBE 89.2759%-104 - C9 -3I92 5.7 FEOB_ECOLI
26 PsiBlast_CBE 89.2259%-110 - C9 -2WIA - ? -
29 PsiBlast_CBE 88.6358% -99 - C9 -4Q5I - FEOB_ECOLI -
23 PsiBlast_CBE 88.5959%-102 - C9 -3I8X 6.1 FEOB_ECOLI
25 PsiBlast_CBE 88.4259% -97 - C9 -2WIB 6.5 ?
30 PsiBlast_CBE 88.2457%-103 - C9 -4R98 3.2 FEOB_ECOLI
5 PsiBlast_PDB 88.0759%-108 - C9 -2WIC 8.0 ?
9 PsiBlast_PDB 86.8459%-101 - C9 -4Q00 - FEOB_ECOLI -
6 PsiBlast_PDB 85.9858%-106 - C9 -3HYT 6.8 FEOB_ECOLI
28 PsiBlast_CBE 85.9258%-103 - C9 -3HYT 4.9 FEOB_ECOLI
27 PsiBlast_CBE 85.6058%-102 - C9 -3HYT 7.0 FEOB_ECOLI
17 PsiBlast_PDB 77.9936% -98 - C9 -3B1W 6.7 ?
42 PsiBlast_CBE 76.0236% -91 - C9 -3TAH 6.9 ?
36 PsiBlast_CBE 75.7536%-100 - C9 -3B1W 6.6 ?
16 PsiBlast_PDB 74.9736% -92 - C9 -3B1V 11.5 ?
13 PsiBlast_PDB 74.3536% -92 - C9 -3LX5 10.8 ?
35 PsiBlast_CBE 74.0236% -95 - C9 -3B1W 6.5 ?
48 PsiBlast_CBE 73.9537% -95 - C9 -3A1T 6.3 ?
18 PsiBlast_PDB 73.7938% -91 - C9 -4NON 6.9 ?
37 PsiBlast_CBE 73.6436%-100 - C9 -3B1W 6.9 ?
62 HHSearch 73.2836% -89 - C9 -3B1V 11.5 ?
38 PsiBlast_CBE 73.2838% -94 - C9 -4NON 6.4 ?
47 PsiBlast_CBE 72.9537% -90 - C9 -3A1U Error ?
41 PsiBlast_CBE 72.8236% -93 - C9 -3B1Y 7.9 ?
43 PsiBlast_CBE 72.8036% -89 - C9 -3TAH 6.2 ?
15 PsiBlast_PDB 72.3936% -90 - C9 -3SS8 8.2 ?
46 PsiBlast_CBE 71.9937% -92 - C9 -3A1U 6.8 ?
14 PsiBlast_PDB 71.9036% -93 - C9 -3LX8 7.4 ?
39 PsiBlast_CBE 71.3936% -88 - C9 -3B1X 10.1 ?
40 PsiBlast_CBE 71.3736% -88 - C9 -3B1X 10.0 ?
34 PsiBlast_CBE 70.9936% -88 - C9 -3SS8 7.9 ?
31 PsiBlast_CBE 69.8149%-102 - C9 -2WJG 5.7 FEOB_METJA
19 PsiBlast_PDB 68.9453%-104 - C9 -2WJJ 6.6 FEOB_METJA
64 HHSearch 68.8451%-103 - C9 -2WJG 6.2 FEOB_METJA
10 PsiBlast_PDB 68.7249%-103 - C9 -2WJG 6.2 FEOB_METJA
33 PsiBlast_CBE 67.1352%-104 - C9 -2WJH 3.2 FEOB_METJA
12 PsiBlast_PDB 67.0252%-104 - C9 -2WJH 5.5 FEOB_METJA
65 HHSearch 66.8552% -99 * C9 *2WJI 6.4 FEOB_METJA
32 PsiBlast_CBE 66.6152%-105 - C9 -2WJI 6.1 FEOB_METJA
11 PsiBlast_PDB 65.9052%-101 - C9 -2WJI 6.4 FEOB_METJA
66 HHSearch 59.4834% -97 - C9 -3W5J 5.8 ?
51 PsiBlast_CBE 58.5035% -94 - C9 -3W5J 5.8 ?