@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4400: (2016-02-27 )
MKRVHVAAAVIRGSDGRVLIARRPEDKHQGGLWEFPGGKVEDGEPVRAALARELEEELGIRVERARPLIQVRHDYADKHVLLDVWEVDGFSGEAHGAEGQPLAWVEPRELADYEFPAANAPIVQAARLPAHYLITPDGLEPGELISGVRKAVEAGIRLIQLRAPNMFSPEYRDLAIDIQGLCAGKAQLMLKGPLEWLGDFPAAGWHLTSAQLRKYASAGRPFPEGRLLAASCHDAEELALAASMGVEFVTLSPVQPTESHPGEPALGWDKAAELIAGFNQPVYLLGGLGPQQAEQAWEHGAQGVAGIRAFWPGGL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GTP_A_3(3FFU)
?
[Raw transfer]




GTP_B_7(3FFU)
?
[Raw transfer]




DGT_B_4(3EF5)
?
[Raw transfer]




ADP_A_3(3R03)
?
[Raw transfer]




ADP_A_3(3R03)
?
[Raw transfer]




HO_A_3(3EEU)
?
[Raw transfer]




HO_B_7(3EEU)
?
[Raw transfer]




TLA_A_7(3A6V)
MUTT_ECOLI
[Raw transfer]




TLA_B_11(3A6V)
MUTT_ECOLI
[Raw transfer]




TLA_B_11(3A6V)
MUTT_ECOLI
[Raw transfer]




1 PsiBlast_PDB 89.5144%-108 - C2 -3HHJ - ? -
21 PsiBlast_CBE 88.3244%-104 - C2 -3HHJ - ? -
145 HHSearch 87.2243% -96 - C2 -3R03 4.4 ?
2 PsiBlast_PDB 84.5045% -95 - C2 -3R03 4.4 ?
5 PsiBlast_PDB 82.7937% -90 - C2 -3A6T - MUTT_ECOLI -
10 PsiBlast_PDB 81.8140% -90 - C2 -3EF5 - ? -
6 PsiBlast_PDB 81.7737% -95 - C2 -3A6U - MUTT_ECOLI -
4 PsiBlast_PDB 80.1237%-110 - C2 -3A6S - MUTT_ECOLI -
22 PsiBlast_CBE 79.4537%-103 - C2 -3A6V 2.7 MUTT_ECOLI
12 PsiBlast_PDB 79.3540% -93 - C2 -2RRK - NUDG_ECOLI -
7 PsiBlast_PDB 79.2137%-104 - C2 -3A6V 2.8 MUTT_ECOLI
9 PsiBlast_PDB 79.1740% -82 - C2 -3EEU 2.8 ?
11 PsiBlast_PDB 78.6840% -79 - C2 -3FFU 6.2 ?
23 PsiBlast_CBE 78.4737%-114 - C2 -3A6S - MUTT_ECOLI -
24 PsiBlast_CBE 78.3240% -82 - C2 -3FFU 6.4 ?
26 PsiBlast_CBE 77.7440% -92 - C2 -3EEU 2.8 ?
128 HHSearch 77.3921%-103 - C3 -1XI3 - THIE_PYRFU -
8 PsiBlast_PDB 77.2440% -79 - C2 -3EES - ? -
25 PsiBlast_CBE 75.5840% -92 - C2 -3EF5 5.1 ?
130 HHSearch 72.1122% -94 - C3 -2TPS - THIE_BACSU -