@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4412: (2016-02-27 )
MKGNVLIMAGGTGGHVFPALACAREFQARGYAVHWLGTPRGIENDLVPKAGLPLHLIQVSGLRGKGLKSLVKAPLELLKSLFQALRVIRQLRPVCVLGLGGYVTGPGGLAARLNGVPLVIHEQNAVAGTANRSLAPIARRVCEAFPDTFPASDKRLTTGNPVRGELFLDAHARAPLTGRRVNLLVLGGSLGAEPLNKLLPEALAQVPLEIRPAIRHQAGRQHAEITAERYRTVAVEADVAPFISDMAAAYAWADLVICRAGALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLMHPETLRSMADQARSLAKPEATRTVVDACLEVARG

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

UD1_A_2(3S2U)
MURG_PSEAE
[Raw transfer]




UD1_A_2(3S2U)
MURG_PSEAE
[Raw transfer]




UD2_D_4(1NLM)
MURG_ECOLI
[Raw transfer]




UD2_C_3(1NLM)
MURG_ECOLI
[Raw transfer]




GOL_F_6(1NLM)
MURG_ECOLI
[Raw transfer]




GOL_G_7(1NLM)
MURG_ECOLI
[Raw transfer]




1 PsiBlast_PDB 99.64100%-122 - C2 -3S2U 8.5 MURG_PSEAE
25 HHSearch 98.4097%-122 - C2 -3S2U 8.0 MURG_PSEAE
44 Fugue 85.1445%-107 - C2 -1F0K - MURG_ECOLI -
2 PsiBlast_PDB 84.0644%-108 - C2 -1F0K - MURG_ECOLI -
20 PsiBlast_CBE 83.3444%-104 - C2 -1F0K - MURG_ECOLI -
19 PsiBlast_CBE 83.2344%-106 - C2 -1NLM 5.9 MURG_ECOLI
3 PsiBlast_PDB 82.9644%-104 - C2 -1NLM 6.3 MURG_ECOLI
24 HHSearch 81.6544%-102 - C2 -1F0K - MURG_ECOLI -
46 Fugue 79.0843%-106 - C2 -1F0K - MURG_ECOLI -
28 HHSearch 59.3719% -84 - C2 -3TSA - ? -
33 HHSearch 59.1923% -91 - C2 -2IYF - OLED_STRAT -
34 HHSearch 58.4916% -85 - C2 -3WAD - ? -
30 HHSearch 57.8121% -91 - C2 -2IYA - ? -
31 HHSearch 56.7221% -81 - C2 -3OTG - ? -
26 HHSearch 56.5218% -80 * C2 *3RSC - ? -
32 HHSearch 56.2720% -80 - C2 -2P6P - ? -
37 HHSearch 54.9217% -69 - C2 -3H4T - GTFA_AMYOR -
29 HHSearch 54.5317% -86 - C2 -2YJN - ERYC3_SACEN -
27 HHSearch 53.9817% -86 - C2 -3IA7 - ? -
36 HHSearch 53.7219% -82 - C2 -3OTI - ? -