@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4420: (2016-02-27 )
MNATYRHITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGAGGRLLGFDKDPQAIQTGKALAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDPERGFSFLNDGPLDMRMNPGQGISAAEFIANATEEEIARVFKEYGEERFAKRMARAIVQRRQERPFERTADLAEVITVANPAWEKGKNPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLVVISFHSLEDRIVKLFMRKHAKGEADNLPRDLPIRSKVFEPRLKLLGKPQYASEEELKANPRSRSAVMRVAEKLR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SAM_A_2(3TKA)
RSMH_ECOLI
[Raw transfer]




SAH_A_5(1M6Y)
RSMH_THEMA
[Raw transfer]




SAH_A_5(1M6Y)
RSMH_THEMA
[Raw transfer]




SAM_A_2(3TKA)
RSMH_ECOLI
[Raw transfer]




SAM_C_3(1WG8)
RSMH_THET8
[Raw transfer]




SAH_A_5(1M6Y)
RSMH_THEMA
[Raw transfer]




SAM_D_4(1WG8)
RSMH_THET8
[Raw transfer]




SAM_A_5(1N2X)
RSMH_THEMA
[Raw transfer]




SAM_D_4(1WG8)
RSMH_THET8
[Raw transfer]




117 HHSearch 94.1155% -76 - C3 -3TKA 9.6 RSMH_ECOLI
1 PsiBlast_PDB 93.6155% -74 - C3 -3TKA 9.6 RSMH_ECOLI
118 HHSearch 88.3743% -72 * C3 *1M6Y 7.7 RSMH_THEMA
3 PsiBlast_PDB 86.3539% -70 - C3 -1M6Y 7.7 RSMH_THEMA
4 PsiBlast_PDB 85.9839% -68 - C3 -1N2X 8.7 RSMH_THEMA
119 HHSearch 85.9148% -75 - C3 -1WG8 10.2 RSMH_THET8
21 PsiBlast_CBE 85.0045% -73 - C3 -1WG8 9.1 RSMH_THET8
2 PsiBlast_PDB 83.9445% -72 - C3 -1WG8 10.2 RSMH_THET8
141 Fugue 78.4039% -54 - C3 -1M6Y 7.4 RSMH_THEMA
143 Fugue 45.3119% -45 - C3 -4PON - ? -
129 HHSearch 42.3520% -50 - C3 -1O54 - ? -
130 HHSearch 41.1223% -44 - C3 -3EEY - ? -
128 HHSearch 41.0220% -32 - C3 -2PWY - TRMI_THET2 -
140 HHSearch 39.8818% -32 - C3 -1I9G - TRMI_MYCTU -
145 Fugue 39.5317% -13 - C3 -3G5L - ? -
99 PsiBlast_CBE 38.7736% -26 - C4 -1HA2 - ALBU_HUMAN -
149 Fugue 38.4116% -27 - C3 -3KJH - ? -
55 PsiBlast_CBE 38.3436% -33 - C4 -3A73 - ALBU_HUMAN -
14 PsiBlast_PDB 38.3136% -28 - C4 -1E7G - ALBU_HUMAN -
132 HHSearch 38.3011% -53 - C3 -1DL5 - PIMT_THEMA -