@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4427: (2016-02-27 )
MNSSRPYLVRALYEWIVDNDCTPHILVNAEFAGVKVPPGYASDGQIVLNVSPSAVRHLHMDNEAVSFEGRFGGVAQSLYIPALAVMAIYARENGQGMVFDLEQPGPVDDEPGDDDGGPSDEPPRPSGRPSLKVVK

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CHAIN_E_5(1YFN)
SSPB_ECOLI
[Raw transfer]

-

CHAIN_G_7(1YFN)
SSPB_ECOLI
[Raw transfer]

-

CHAIN_F_6(1YFN)
SSPB_ECOLI
[Raw transfer]

-

CHAIN_H_8(1YFN)
SSPB_ECOLI
[Raw transfer]

-

CHAIN_E_5(1YFN)
SSPB_ECOLI
[Raw transfer]

-

CHAIN_C_3(1OU8)
SSPB_HAEIN
[Raw transfer]

-

CHAIN_C_3(1OU8)
SSPB_HAEIN
[Raw transfer]

-

CHAIN_C_3(1TWB)
SSPB_HAEIN
[Raw transfer]

-

CHAIN_D_4(1OU8)
SSPB_HAEIN
[Raw transfer]

-

CHAIN_K_6(1OX9)
SSPB_ECOLI
[Raw transfer]

-

CHAIN_N_12(1OX9)
SSPB_ECOLI
[Raw transfer]

-

CHAIN_P_16(1OX9)
SSPB_ECOLI
[Raw transfer]

-

CHAIN_I_2(1OX9)
SSPB_ECOLI
[Raw transfer]

-

CHAIN_K_6(1OX9)
SSPB_ECOLI
[Raw transfer]

-

CHAIN_D_4(1TWB)
SSPB_HAEIN
[Raw transfer]

-

CHAIN_P_16(1OX9)
SSPB_ECOLI
[Raw transfer]

-

CHAIN_L_8(1OX9)
SSPB_ECOLI
[Raw transfer]

-

CHAIN_O_14(1OX9)
SSPB_ECOLI
[Raw transfer]

-

31 PsiBlast_CBE 97.7853%-185 - C6 -1OU8 6.5 SSPB_HAEIN
5 PsiBlast_PDB 96.4153%-178 - C6 -1OU8 5.2 SSPB_HAEIN
32 PsiBlast_CBE 96.3153%-190 - C6 -1ZSZ - SSPB_HAEIN -
3 PsiBlast_PDB 96.2353%-185 - C6 -1ZSZ - ? -
33 PsiBlast_CBE 96.1852%-195 - C6 -1ZSZ - ? -
6 PsiBlast_PDB 96.0653%-184 - C6 -1OU9 - SSPB_HAEIN -
8 PsiBlast_PDB 95.7852%-180 - C6 -1TWB 5.7 SSPB_HAEIN
34 PsiBlast_CBE 95.6352%-185 - C6 -1TWB 4.9 SSPB_HAEIN
45 HHSearch 95.4950%-163 - C6 -1OU8 5.2 SSPB_HAEIN
23 PsiBlast_CBE 95.0651%-179 - C6 -1YFN 9.1 SSPB_ECOLI
30 PsiBlast_CBE 94.5351%-167 - C6 -1OX9 3.7 SSPB_ECOLI
22 PsiBlast_CBE 94.5351%-180 - C6 -1YFN 9.9 SSPB_ECOLI
27 PsiBlast_CBE 94.1251%-169 - C6 -1OX9 3.3 SSPB_ECOLI
21 PsiBlast_CBE 93.4951%-178 - C6 -1YFN 9.7 SSPB_ECOLI
2 PsiBlast_PDB 93.4451%-174 - C6 -1OX9 4.7 SSPB_ECOLI
24 PsiBlast_CBE 93.3751%-179 - C6 -1OX9 4.6 SSPB_ECOLI
28 PsiBlast_CBE 92.6951%-171 - C6 -1OX9 6.3 SSPB_ECOLI
29 PsiBlast_CBE 92.5351%-172 - C6 -1OX9 5.8 SSPB_ECOLI
46 HHSearch 92.5048%-148 - C6 -1OU9 - SSPB_HAEIN -
1 PsiBlast_PDB 92.4651%-175 - C6 -1YFN 9.1 SSPB_ECOLI
25 PsiBlast_CBE 92.4351%-175 - C6 -1OX9 5.3 SSPB_ECOLI
26 PsiBlast_CBE 92.2751%-174 - C6 -1OX9 4.9 SSPB_ECOLI
47 HHSearch 92.2350%-168 - C6 -1YFN 9.1 SSPB_ECOLI