@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4456: (2016-02-27 )
MSTDSAYAVELKGLTFKRGSRAIFDNIDVRIPRGKVTGIMGPSGCGKTTLLRLIASQLRPSKGEVWVNGQNLPQLSRGDLFDMRKQFGVLFQSGALFTDLDVFENVAFPLRVHTQLPEEMIRDIVLMKLQAVGLRGAVELMPDELSGGMKRRVALARAIALDPQILLYDEPFVGQDPIAMGVLVRLIRLLNDALGITSIVVSHDLAETASIADYIYIVGDGRVLGHGTPDVLKETDDPRIRQFVKGIPDGPVPFHYPARDYRADLLGER

Atome Classification :

(43 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]




ANP_K_6(3C41)
?
[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




ANP_J_5(3C41)
?
[Raw transfer]




AGS_B_6(3C4J)
?
[Raw transfer]




ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]




ATP_J_5(4YMU)
?
[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]




ATP_B_6(3FVQ)
FBPC_NEIG1
[Raw transfer]




ATP_J_5(4YMV)
?
[Raw transfer]




ATP_A_5(1L2T)
Y796_METJA
[Raw transfer]




AGS_A_4(3C4J)
?
[Raw transfer]




ADP_A_2(4U00)
?
[Raw transfer]




ADP_B_8(3TIF)
Y796_METJA
[Raw transfer]




ADP_A_3(3TIF)
Y796_METJA
[Raw transfer]




ADP_A_5(2OLJ)
?
[Raw transfer]




ADP_B_6(2Q0H)
?
[Raw transfer]




ADP_A_5(2Q0H)
?
[Raw transfer]




ADP_B_6(2OLJ)
?
[Raw transfer]




AT4_A_5(2OLK)
?
[Raw transfer]




ATP_C_3(1VCI)
?
[Raw transfer]




AT4_B_6(2OLK)
?
[Raw transfer]




AT4_C_7(2OLK)
?
[Raw transfer]




AT4_D_8(2OLK)
?
[Raw transfer]




25 PsiBlast_CBE 90.7432%-135 - C1 -3TUI - METN_ECOLI -
22 PsiBlast_CBE 89.1832%-136 - C1 -3TUZ - METN_ECOLI -
2 PsiBlast_PDB 88.9132%-132 - C1 -3TUI - METN_ECOLI -
27 PsiBlast_CBE 88.6232%-129 - C1 -3TUI - METN_ECOLI -
3 PsiBlast_PDB 88.5132%-136 - C1 -3TUZ - METN_ECOLI -
127 Fugue 88.0234%-118 - C1 -1Z47 - ? -
24 PsiBlast_CBE 87.7332%-131 - C1 -3TUZ - METN_ECOLI -
26 PsiBlast_CBE 87.5432%-128 - C1 -3TUI - METN_ECOLI -
23 PsiBlast_CBE 86.9632%-132 - C1 -3TUZ - METN_ECOLI -
123 Fugue 86.7429%-126 - C1 -3TUZ - METN_ECOLI -
90 PsiBlast_CBE 84.6331%-120 - C1 -1B0U 5.3 HISP_SALTY
118 HHSearch 83.6830%-125 - C1 -1B0U - HISP_SALTY -
4 PsiBlast_PDB 82.9532%-124 - C1 -3DHW - METN_ECOLI -
54 PsiBlast_CBE 82.3432%-132 - C1 -4U02 - ? -
55 PsiBlast_CBE 81.8632%-130 - C1 -4U02 - ? -
53 PsiBlast_CBE 81.7732%-130 - C1 -4U02 - ? -
62 PsiBlast_CBE 81.1831%-133 * C1 *3PUZ - MALK_ECOLI -
71 PsiBlast_CBE 80.2331%-133 - C1 -3PUV - MALK_ECOLI -
63 PsiBlast_CBE 80.2131%-130 - C1 -3PUZ - MALK_ECOLI -
56 PsiBlast_CBE 79.8432%-130 - C1 -4U00 6.1 ?
35 PsiBlast_CBE 77.4531%-133 - C1 -3C4J 4.1 ?
44 PsiBlast_CBE 77.3031%-133 - C1 -2OLK 5.5 ?
43 PsiBlast_CBE 76.8431%-127 - C1 -2OLK 4.3 ?
46 PsiBlast_CBE 76.7431%-129 - C1 -2OLK 5.5 ?
15 PsiBlast_PDB 76.4832%-133 - C1 -4YMU 5.8 ?
20 PsiBlast_PDB 75.7131%-125 - C1 -2OLJ 4.8 ?
34 PsiBlast_CBE 75.6832%-136 - C1 -4YMU 4.8 ?
48 PsiBlast_CBE 75.6031%-131 - C1 -3C41 4.9 ?
45 PsiBlast_CBE 75.5731%-123 - C1 -2OLK 4.4 ?
16 PsiBlast_PDB 75.5032%-131 - C1 -4YMV 4.9 ?
47 PsiBlast_CBE 75.1931%-127 - C1 -2OLJ 4.1 ?
49 PsiBlast_CBE 75.0631%-130 - C1 -3C41 5.2 ?
36 PsiBlast_CBE 74.4531%-126 - C1 -3C4J 5.5 ?
38 PsiBlast_CBE 74.4331%-126 - C1 -2Q0H 4.4 ?
33 PsiBlast_CBE 73.4932%-129 - C1 -4YMV 5.5 ?
83 PsiBlast_CBE 71.2533%-109 - C1 -3TIF 5.8 Y796_METJA
37 PsiBlast_CBE 71.0131%-128 - C1 -2Q0H 5.0 ?
84 PsiBlast_CBE 69.9133%-112 - C1 -1L2T 7.1 Y796_METJA
82 PsiBlast_CBE 69.7733%-115 - C1 -3TIF 6.4 Y796_METJA
85 PsiBlast_CBE 69.5433%-109 - C1 -1L2T 6.5 Y796_METJA
19 PsiBlast_PDB 69.3132%-137 - C1 -1VCI 4.1 ?
95 PsiBlast_CBE 68.1834%-138 - C1 -3FVQ 6.4 FBPC_NEIG1
96 PsiBlast_CBE 66.6634%-135 - C1 -3FVQ 5.9 FBPC_NEIG1