@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4461: (2016-02-27 )
MATLKAQHLAKSYKGRQVVRDVSMSIDSGQIVGLLGPNGAGKTTCFYMIVGLVQADQGVVRIDEQNVTHLPMHGRARAGIGYLPQEASIFRKLSVSDNIMAILETRSDLDRNGRKEALEGLLQEFHIHHIRDNLGMSLSGGERRRVEIARALASAPKFILLDEPFAGVDPISVGDIKQIIHHLKAKGIGILITDHNVRETLDICETAYIVNDGQLIAEGDAESILANDLVKEVYLGHEFRL

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_5(4QC2)
?
[Raw transfer]




ATP_A_3(4QC2)
?
[Raw transfer]




ATP_B_9(4P33)
LPTB_ECOLI
[Raw transfer]




ATP_A_4(4P33)
LPTB_ECOLI
[Raw transfer]




ADP_A_3(4P32)
LPTB_ECOLI
[Raw transfer]




ADP_B_5(4P32)
LPTB_ECOLI
[Raw transfer]




ADP_A_3(4P31)
LPTB_ECOLI
[Raw transfer]




23 PsiBlast_CBE 97.4465%-121 - C1 -4P33 8.5 LPTB_ECOLI
3 PsiBlast_PDB 97.4165%-122 - C1 -4P33 8.7 LPTB_ECOLI
2 PsiBlast_PDB 96.8766%-118 - C1 -4P32 6.8 LPTB_ECOLI
1 PsiBlast_PDB 96.5966%-119 - C1 -4QC2 8.1 ?
21 PsiBlast_CBE 96.0666%-123 - C1 -4QC2 8.3 ?
22 PsiBlast_CBE 95.8366%-119 - C1 -4P32 7.7 LPTB_ECOLI
24 PsiBlast_CBE 93.4255%-121 - C1 -4WBS - ? -
5 PsiBlast_PDB 91.9155%-124 - C1 -4WBS - ? -
6 PsiBlast_PDB 77.0834%-118 - C1 -1JI0 - ? -
67 HHSearch 75.6335%-115 - C1 -1JI0 - ? -
70 HHSearch 71.6131%-104 - C1 -1G6H - LIVG_METJA -
49 Fugue 69.9428%-117 - C1 -3TUZ - METN_ECOLI -
54 HHSearch 68.8930%-108 - C1 -1Z47 - ? -
7 PsiBlast_PDB 68.8230%-106 - C1 -1G6H - LIVG_METJA -
62 HHSearch 68.3728%-104 * C1 *3TUI - METN_ECOLI -
56 HHSearch 67.6027%-108 - C1 -2IT1 - ? -
60 HHSearch 66.6226%-111 - C1 -3RLF - MALK_ECOLI -
8 PsiBlast_PDB 65.5430%-103 - C1 -1GAJ - LIVG_METJA -
57 HHSearch 64.6125%-112 - C1 -1V43 - ? -
10 PsiBlast_PDB 64.2927%-105 - C1 -2IT1 - ? -
4 PsiBlast_PDB 60.8965% -8 - C1 -4P31 7.2 LPTB_ECOLI