@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4483: (2016-02-27 )
MLHQLTLAEIARALADKQFSAEELTRTLLGRIRQLDPQLNSFISITDDLAIAQAKAADERRANGENGALLGAPIAHKDLFCTQGVRTSCGSKMLDNFVSPYDATVVEKLTAAGAVTLGKLNMDEFAMGSSNQSSHYGAVKNPWSLDRVPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPAALTNLTGIKPTYGRVSRWGMIAYASSLDQGGPLARTAEDCALMLGVMAGFDPKDSTSVEQPVDDYLAALQKPLSGLRIGLPREYFGAGLDSRIADAVLAVVEELKTLGATVKDISLPNMQHAIPAYYVIAPAEASSNLSRFDGVRYGYRCDAPQNLEDLYKRSRAEGFGSEVKNRIMVGTYALSAGYYDAYYLQAQKIRRLIKNDFVSAFAEVDVILGPTTPNPAWKIGEKNDDPVSQYLEDIYTITANLAGLPGLSMPAGFVDGLPVGVQLLAPYFQEGRLLNVAHQYQQVSDWHTRTPAGF

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ASN_A_5(2DQN)
GATA_STAAM
[Raw transfer]




GLN_A_5(2F2A)
GATA_STAAM
[Raw transfer]




GLN_A_4(4N0I)
GATA_YEAST
[Raw transfer]




1 PsiBlast_PDB 99.90100% -74 - C2 -4WJ3 - GATA_PSEAE -
63 HHSearch 85.1948% -63 - C2 -3IP4 - GATA_STAAM -
4 PsiBlast_PDB 85.1149% -61 - C2 -3H0R - GATA_AQUAE -
64 HHSearch 85.0850% -60 - C2 -3H0L - GATA_AQUAE -
2 PsiBlast_PDB 84.8849% -61 - C2 -3H0L - GATA_AQUAE -
3 PsiBlast_PDB 84.7449% -62 - C2 -3H0M - GATA_AQUAE -
9 PsiBlast_PDB 84.6550% -64 - C2 -3IP4 - GATA_STAAM -
34 PsiBlast_CBE 84.3649% -62 - C2 -3H0M - GATA_AQUAE -
10 PsiBlast_PDB 84.1950% -63 - C2 -2F2A 3.1 GATA_STAAM
27 PsiBlast_CBE 84.1249% -62 - C2 -3H0R - GATA_AQUAE -
5 PsiBlast_PDB 83.7050% -62 - C2 -2DF4 - GATA_STAAM -
6 PsiBlast_PDB 83.6950% -62 - C2 -2DQN 3.7 GATA_STAAM
7 PsiBlast_PDB 83.5450% -62 - C2 -2G5H - GATA_STAAM -
8 PsiBlast_PDB 83.1750% -60 - C2 -2G5I - GATA_STAAM -
12 PsiBlast_PDB 81.4348% -65 - C2 -3KFU - GATA_THET8 -
65 HHSearch 81.0048% -66 * C2 *3KFU - GATA_THET8 -
11 PsiBlast_PDB 78.8843% -63 - C2 -3AL0 - GATA_THEMA -
67 HHSearch 77.8045% -66 - C2 -2GI3 - GATA_THEMA -
13 PsiBlast_PDB 77.3743% -66 - C2 -2GI3 - GATA_THEMA -
43 PsiBlast_CBE 76.6333% -58 - C2 -1M21 - ? -
15 PsiBlast_PDB 71.5534% -65 - C2 -4N0I 3.7 GATA_YEAST