@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4524: (2016-02-28 )
MPNLTLADLQGEIQANVRTALAEDVGGGDLTAQLIDPQREAEARVITREHATIAGRAWVDEVFRQVDPRVLVTWQVEDGQRVEPNQMLFQLKGPARALLTGERSALNFLQLLSGTATRSQHYADLVAGTAVKLLDTRKTLPGLRLAQKYAVTCGGCHNHRIGLYDAFLIKENHIAACGGIDRAIAEARRIAPGKPVEVEVENLDELRQALEAGADIVMLDELSLDDMRTAVALTAGRAKLEASGGINEGTLRNIAETGVDYISIGTLTKDVRAVDLSMRLTL

Atome Classification :

(40 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NCN_B_4(4I9A)
?
[Raw transfer]




NCN_K_11(2B7Q)
NADC_HELPY
[Raw transfer]




NCN_A_3(4I9A)
?
[Raw transfer]




NCN_I_9(2B7Q)
NADC_HELPY
[Raw transfer]




NCN_G_7(2B7Q)
NADC_HELPY
[Raw transfer]




NTM_B_4(1QAP)
NADC_SALTY
[Raw transfer]




PHT_M_13(2B7P)
NADC_HELPY
[Raw transfer]




NTM_M_13(2B7N)
NADC_HELPY
[Raw transfer]




NTM_M_13(2B7N)
NADC_HELPY
[Raw transfer]




NTM_Q_17(2B7N)
NADC_HELPY
[Raw transfer]




PHT_B_4(3C2R)
NADC_YEAST
[Raw transfer]




NTM_O_15(2B7N)
NADC_HELPY
[Raw transfer]




NTM_A_3(1QAP)
NADC_SALTY
[Raw transfer]




NTM_A_2(3C2O)
NADC_YEAST
[Raw transfer]




PHT_O_15(2B7P)
NADC_HELPY
[Raw transfer]




PHT_Q_17(2B7P)
NADC_HELPY
[Raw transfer]




NTM_A_3(1QAP)
NADC_SALTY
[Raw transfer]




NTM_A_3(1QAP)
NADC_SALTY
[Raw transfer]




PHT_A_3(3C2R)
NADC_YEAST
[Raw transfer]




PRP_A_2(3C2F)
NADC_YEAST
[Raw transfer]




PRP_A_2(3C2V)
NADC_YEAST
[Raw transfer]




EDO_B_7(3L0G)
?
[Raw transfer]




EDO_A_5(3L0G)
?
[Raw transfer]




EDO_A_5(3L0G)
?
[Raw transfer]




EDO_C_9(3L0G)
?
[Raw transfer]




EDO_D_11(3L0G)
?
[Raw transfer]




CHAIN_E_4(3GNN)
?
[Raw transfer]

-

ACY_A_13(2I1O)
PNCB_THEAC
[Raw transfer]




72 HHSearch 95.3156%-103 - C3 -3PAJ - ? -
2 PsiBlast_PDB 93.5555%-107 - C3 -3PAJ - ? -
75 HHSearch 90.4057%-102 - C3 -1QAP 3.0 NADC_SALTY
21 PsiBlast_CBE 90.0757%-109 - C3 -1QAP 2.9 NADC_SALTY
1 PsiBlast_PDB 89.8157%-106 - C3 -1QAP 3.0 NADC_SALTY
93 Fugue 89.6355%-103 - C3 -1QAP 3.0 NADC_SALTY
73 HHSearch 88.2750%-105 - C3 -3TQV - ? -
4 PsiBlast_PDB 87.7050%-108 - C3 -3TQV - ? -
80 HHSearch 82.9045% -99 - C3 -1X1O - ? -
5 PsiBlast_PDB 82.4947% -96 - C3 -1X1O - ? -
3 PsiBlast_PDB 80.6655%-108 - C3 -3GNN - ? -
77 HHSearch 80.2755%-108 - C3 -3GNN - ? -
74 HHSearch 79.3635%-100 * C3 *3L0G 3.1 ?
79 HHSearch 79.3441% -85 - C3 -1QPO - NADC_MYCTU -
6 PsiBlast_PDB 79.2536%-102 - C3 -3L0G 3.1 ?
25 PsiBlast_CBE 79.0736%-100 - C3 -3L0G 3.1 ?
58 PsiBlast_CBE 78.6535% -94 - C3 -2JBM - NADC_HUMAN -
59 PsiBlast_CBE 78.5335% -92 - C3 -2JBM - NADC_HUMAN -
52 PsiBlast_CBE 78.4635% -92 - C3 -2JBM - NADC_HUMAN -
55 PsiBlast_CBE 78.3635% -93 - C3 -2JBM - NADC_HUMAN -
24 PsiBlast_CBE 77.9836%-100 - C3 -3L0G 3.1 ?
23 PsiBlast_CBE 77.6436% -98 - C3 -3L0G 3.1 ?
12 PsiBlast_PDB 77.2734% -97 - C3 -2B7P 3.6 NADC_HELPY
22 PsiBlast_CBE 76.8555%-100 - C3 -3GNN 3.1 ?
11 PsiBlast_PDB 76.7834%-100 - C3 -2B7N 3.4 NADC_HELPY
76 HHSearch 76.3734%-100 - C3 -2B7N 3.4 NADC_HELPY
50 PsiBlast_CBE 76.2734% -96 - C3 -2B7N 3.3 NADC_HELPY
46 PsiBlast_CBE 75.9734% -98 - C3 -2B7Q 4.5 NADC_HELPY
51 PsiBlast_CBE 75.8034%-100 - C3 -2B7N 3.5 NADC_HELPY
70 PsiBlast_CBE 75.4736% -94 - C3 -4I9A 5.0 ?
49 PsiBlast_CBE 75.3834% -98 - C3 -2B7P 3.4 NADC_HELPY
71 PsiBlast_CBE 74.2436% -93 - C3 -4I9A 3.6 ?
48 PsiBlast_CBE 74.1934% -98 - C3 -2B7P 3.7 NADC_HELPY
47 PsiBlast_CBE 73.7334% -98 - C3 -2B7Q 4.7 NADC_HELPY
13 PsiBlast_PDB 72.8734% -94 - C3 -2B7Q 4.8 NADC_HELPY
20 PsiBlast_PDB 69.5632% -91 - C3 -3C2F 2.1 NADC_YEAST
19 PsiBlast_PDB 68.9932% -92 - C3 -3C2O 2.6 NADC_YEAST
17 PsiBlast_PDB 68.7632% -89 - C3 -3C2R 3.3 NADC_YEAST
68 PsiBlast_CBE 67.0832% -83 - C3 -3C2R 2.6 NADC_YEAST
69 PsiBlast_CBE 66.7332% -86 - C3 -3C2V 2.5 NADC_YEAST