@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4569: (2016-02-28 )
MQPQAFYRVVAEDFTAVDGIIRRQLTSRVPLVEKIGDYIISAGGKRLRPLLVLLAGKTLGYKGDDLCLLAATIEFLHTSTLLHDDVVDASGLRRGRSTANALWGNAPSVLVGDFLYARSFEMMVELGSMPVMRIISQATRVIAEGEVLQLSKVRDASTTEETYMEVIRGKTAMLFEASTHSAAALCQAGEEQSEALRRFGDYLGIAFQLVDDLLDYRGDAATLGKNVGDDLAEGKPTLPLIVTMRDGTEEQAALVRKAIQQGGSQDLESVCAAVEAAGALDYTANLARDYAARAIACLDTLPDNEYRSALVELSEFAVARTH

Atome Classification :

(38 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

RIS_A_10(1RQJ)
ISPA_ECOLI
[Raw transfer]



IPE_B_7(3OYR)
?
[Raw transfer]



DST_D_6(3OAC)
?
[Raw transfer]



DST_D_11(3OAB)
?
[Raw transfer]



IPE_A_4(4LLT)
?
[Raw transfer]



DST_D_11(3KRF)
?
[Raw transfer]



IPE_B_9(4LLT)
?
[Raw transfer]



GST_A_4(4LLS)
?
[Raw transfer]



GPP_D_9(3KRP)
?
[Raw transfer]



IPE_D_7(3KRC)
?
[Raw transfer]



DST_D_11(3KRO)
?
[Raw transfer]



DMA_A_6(4GP2)
?
[Raw transfer]



GST_B_9(4LLS)
?
[Raw transfer]



IPE_B_4(3OYR)
?
[Raw transfer]



GOL_A_2(3LK5)
?
[Raw transfer]



IPR_A_9(1RQJ)
ISPA_ECOLI
[Raw transfer]



2DE_B_8(3AQC)
HEXB_MICLU
[Raw transfer]



GOL_A_5(3Q2Q)
?
[Raw transfer]



IPE_A_3(3WJO)
?
[Raw transfer]



IPE_A_4(3WJO)
?
[Raw transfer]



CIT_A_3(3PKO)
?
[Raw transfer]



DST_A_6(3OAB)
?
[Raw transfer]



IPE_A_5(3KRC)
?
[Raw transfer]



PPV_A_5(3KRP)
?
[Raw transfer]



DMA_A_3(4GP1)
?
[Raw transfer]



PPV_A_6(3KRF)
?
[Raw transfer]



POP_A_3(3OYR)
?
[Raw transfer]



POP_A_3(3OYR)
?
[Raw transfer]



POP_A_3(3OYR)
?
[Raw transfer]



IPE_A_5(3KRO)
?
[Raw transfer]



IPE_A_2(3Q2Q)
?
[Raw transfer]



PPV_A_5(3KRF)
?
[Raw transfer]
21 PsiBlast_CBE 95.2252%-117 - C1 -3WJN - ? -
23 PsiBlast_CBE 92.8252%-109 - C1 -4JYX - ? -
28 PsiBlast_CBE 92.3252%-110 - C1 -4JYX - ? -
2 PsiBlast_PDB 92.2652%-108 - C1 -4JYX - ? -
22 PsiBlast_CBE 91.8352%-109 - C1 -4JYX - ? -
25 PsiBlast_CBE 90.4952%-112 - C1 -4JYX - ? -
24 PsiBlast_CBE 90.3752%-114 - C1 -4JYX - ? -
29 PsiBlast_CBE 89.8646%-102 * C1 *3OYR 5.4 ?
3 PsiBlast_PDB 89.7552%-113 - C1 -4JXY - ? -
27 PsiBlast_CBE 89.3852%-112 - C1 -4JYX - ? -
26 PsiBlast_CBE 88.4952%-111 - C1 -4JYX - ? -
1 PsiBlast_PDB 88.4652%-112 - C1 -3WJO 3.5 ?
4 PsiBlast_PDB 84.8949%-109 - C1 -4LOB - ? -
73 HHSearch 83.9846%-118 - C1 -3OYR 3.4 ?
62 Fugue 83.9144%-116 - C1 -3OYR 3.4 ?
5 PsiBlast_PDB 82.7046%-115 - C1 -3OYR 3.4 ?
78 HHSearch 76.1431% -97 - C1 -1WY0 - ? -
15 PsiBlast_PDB 69.1530% -85 - C1 -3N3D - ? -
77 HHSearch 68.7727%-106 - C1 -3APZ - SPS3_ARATH -
76 HHSearch 68.4828% -94 - C1 -3AQB - HEXB_MICLU -
10 PsiBlast_PDB 64.8933% -94 - C1 -3Q2Q 3.3 ?
16 PsiBlast_PDB 64.7530% -83 - C1 -3PKO 3.2 ?
8 PsiBlast_PDB 61.9530% -89 - C1 -3AQC 4.0 HEXB_MICLU
33 PsiBlast_CBE 33.7334% -68 - C1 -3KRP 4.5 ?
40 PsiBlast_CBE 33.6234% -72 - C1 -3KRC 2.5 ?
31 PsiBlast_CBE 33.0334% -58 - C1 -3OAB 2.7 ?
39 PsiBlast_CBE 32.8134% -72 - C1 -3KRC 3.9 ?
38 PsiBlast_CBE 32.5934% -69 - C1 -3KRF 3.3 ?
36 PsiBlast_CBE 31.7434% -68 - C1 -3KRO 3.6 ?
35 PsiBlast_CBE 31.3134% -56 - C1 -3KRO 3.4 ?
30 PsiBlast_CBE 31.2134% -55 - C1 -3OAC 3.1 ?
37 PsiBlast_CBE 31.0134% -53 - C1 -3KRF 3.9 ?
34 PsiBlast_CBE 30.7334% -67 - C1 -3KRP 3.4 ?
43 PsiBlast_CBE 30.0134% -56 - C1 -4LLT 2.5 ?
32 PsiBlast_CBE 28.7834% -68 - C1 -3OAB 2.6 ?
45 PsiBlast_CBE 28.5934% -54 - C1 -4LLS 4.3 ?
44 PsiBlast_CBE 27.3134% -54 - C1 -4LLT 3.0 ?
46 PsiBlast_CBE 27.2234% -55 - C1 -4LLS 4.7 ?