@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4602: (2016-02-28 )
MFSRDLTLARYDAELFAAMEQEAQRQEEHIELIASENYTSPAVMEAQGSVLTNKYAEGYPHKRYYGGCEYVDIVEQLAIDRAKQLFGADYANVQPHAGSQANAAVYLALLSAGDTILGMSLAHGGHLTHGASVSSSGKLYNAVQYGIDANGLIDYDEVERLAVEHKPKMIVAGFSAYSQVLDFARFRAIADKVGAYLFVDMAHVAGLVAAGVYPNPVPFADVVTTTTHKTLRGPRGGLILARANEEIEKKLNSAVFPSAQGGPLEHVIAAKAVCFKEALQPEFKTYQQQVLKNAQSMAQVFLDRGFDVVSGGTQNHLFLLSLIKQDITGKDADAALGRAFITVNKNSVPNDPRSPFVTSGLRIGTPAVTTRGFKEAECRELAGWICDILENMGDESVVDGVREKVKAICAKFPVYGN

Atome Classification :

(74 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

2BO_A_3(4WXG)
GLYA_STRT1
[Raw transfer]




2BO_C_6(4WXG)
GLYA_STRT1
[Raw transfer]




PLG_A_3(4WXF)
GLYA_STRT1
[Raw transfer]




PLG_C_6(4WXF)
GLYA_STRT1
[Raw transfer]




FON_H_8(1KL2)
?
[Raw transfer]




ALO_A_3(2W7G)
?
[Raw transfer]




GLY_A_2(2W7H)
?
[Raw transfer]




GOL_B_5(4PVF)
GLYM_HUMAN
[Raw transfer]




GLY_A_2(2VGT)
?
[Raw transfer]




GOL_A_3(4PVF)
GLYM_HUMAN
[Raw transfer]




PLP_C_3(1YJS)
?
[Raw transfer]




ALO_A_3(2VMX)
?
[Raw transfer]




PLP_A_3(2W7K)
?
[Raw transfer]




PLP_A_3(2VMO)
?
[Raw transfer]




PLP_A_3(2VMT)
?
[Raw transfer]




PLP_A_3(2VIB)
?
[Raw transfer]




PLP_A_3(2VGU)
?
[Raw transfer]




PLP_A_3(2VGV)
?
[Raw transfer]




PLP_A_3(2W7M)
?
[Raw transfer]




PLP_A_2(2W7L)
?
[Raw transfer]




PLP_A_2(2W7G)
?
[Raw transfer]




PLP_C_3(1KL1)
?
[Raw transfer]




PLP_A_3(2VI9)
?
[Raw transfer]




PLP_A_3(2W7E)
?
[Raw transfer]




PLP_C_3(1YJZ)
?
[Raw transfer]




PLP_A_3(2VMP)
?
[Raw transfer]




PLP_A_3(2VGT)
?
[Raw transfer]




PLP_C_3(1KKP)
?
[Raw transfer]




PLP_A_3(2W7H)
?
[Raw transfer]




PLP_A_3(2VIA)
?
[Raw transfer]




PLP_A_2(2VMX)
?
[Raw transfer]




PLP_A_6(1RV3)
GLYC_RABIT
[Raw transfer]




PLP_A_3(2VMU)
?
[Raw transfer]




PLP_A_3(2VMQ)
?
[Raw transfer]




PLP_A_3(2VMW)
?
[Raw transfer]




PLP_A_3(2W7J)
?
[Raw transfer]




PLP_A_2(2VI8)
?
[Raw transfer]




PLP_A_2(2VMN)
?
[Raw transfer]




PLP_A_2(2VGS)
?
[Raw transfer]




PLP_A_3(2VMS)
?
[Raw transfer]




PLP_A_2(2VMR)
?
[Raw transfer]




PLP_A_2(2VI8)
?
[Raw transfer]




PLP_A_2(2VMV)
?
[Raw transfer]




PLP_A_3(1KKJ)
?
[Raw transfer]




PLP_A_5(2DKJ)
GLYA_THET8
[Raw transfer]




PLP_A_2(2W7D)
?
[Raw transfer]




PLP_A_5(2DKJ)
GLYA_THET8
[Raw transfer]




PLP_B_6(2DKJ)
GLYA_THET8
[Raw transfer]




PLP_A_3(2W7F)
?
[Raw transfer]




PLP_A_3(2VMZ)
?
[Raw transfer]




PLP_A_2(2W7I)
?
[Raw transfer]




PLP_A_2(1BJ4)
GLYC_HUMAN
[Raw transfer]




PLP_A_3(2VGW)
?
[Raw transfer]




FFO_B_8(2VMY)
?
[Raw transfer]




FON_G_7(1KL2)
?
[Raw transfer]




PLP_C_3(1YJY)
?
[Raw transfer]




FFO_A_6(2VMY)
?
[Raw transfer]




PLP_A_2(3G8M)
GLYA_ECOLI
[Raw transfer]




23 PsiBlast_CBE 91.8174% -93 - C1 -1DFO - GLYA_ECOLI -
22 PsiBlast_CBE 91.5774% -93 - C1 -1DFO - GLYA_ECOLI -
35 PsiBlast_CBE 91.5665% -94 - C1 -4N0W - ? -
1 PsiBlast_PDB 91.3474% -93 - C1 -1DFO - GLYA_ECOLI -
26 PsiBlast_CBE 91.2474% -94 - C1 -1EQB - GLYA_ECOLI -
27 PsiBlast_CBE 91.1774% -94 - C1 -1EQB - GLYA_ECOLI -
24 PsiBlast_CBE 91.0974% -92 - C1 -1DFO - GLYA_ECOLI -
25 PsiBlast_CBE 90.9174% -93 - C1 -1EQB - GLYA_ECOLI -
36 PsiBlast_CBE 90.6565% -93 - C1 -4N0W - ? -
7 PsiBlast_PDB 90.6165% -94 - C1 -4N0W - ? -
2 PsiBlast_PDB 90.3074% -93 - C1 -1EQB - GLYA_ECOLI -
125 Fugue 90.0975% -94 - C1 -1DFO - GLYA_ECOLI -
102 HHSearch 89.9375%-108 - C1 -3GBX - GLYA_SALTY -
34 PsiBlast_CBE 89.9165% -92 - C1 -4N0W - ? -
21 PsiBlast_CBE 89.6373%-109 - C1 -4P3M - GLYA_PSYIN -
31 PsiBlast_CBE 89.5865% -94 - C1 -4OT8 - ? -
28 PsiBlast_CBE 89.3465% -93 - C1 -4OTL - ? -
32 PsiBlast_CBE 89.3365% -93 - C1 -4OT8 - ? -
4 PsiBlast_PDB 89.2573%-107 - C1 -3GBX - GLYA_SALTY -
33 PsiBlast_CBE 89.1565% -92 - C1 -4OT8 - ? -
3 PsiBlast_PDB 87.8274% -93 - C1 -3G8M 4.2 GLYA_ECOLI
41 PsiBlast_CBE 85.0861% -91 - C1 -2W7H 3.0 ?
13 PsiBlast_PDB 84.8761% -91 - C1 -2VI8 4.4 ?
104 HHSearch 84.7762% -90 - C1 -2VI8 4.4 ?
14 PsiBlast_PDB 84.7161% -90 - C1 -2VIB 3.7 ?
18 PsiBlast_PDB 84.6661% -91 - C1 -2W7D 4.5 ?
57 PsiBlast_CBE 84.6361% -89 - C1 -2W7J 4.3 ?
19 PsiBlast_PDB 84.5261% -89 - C1 -2W7E 4.3 ?
60 PsiBlast_CBE 84.4761% -89 - C1 -2VMT 4.5 ?
67 PsiBlast_CBE 84.4261% -88 - C1 -2VMW 4.4 ?
46 PsiBlast_CBE 84.4161% -91 - C1 -2VGT 4.0 ?
66 PsiBlast_CBE 84.2661% -89 - C1 -2VMX 4.1 ?
61 PsiBlast_CBE 84.2361% -90 - C1 -2VMS 3.1 ?
54 PsiBlast_CBE 84.2061% -91 - C1 -2W7M 4.3 ?
62 PsiBlast_CBE 84.1761% -90 - C1 -2VMR 4.4 ?
52 PsiBlast_CBE 84.0361% -89 - C1 -2VMO 3.7 ?
15 PsiBlast_PDB 84.0361% -90 - C1 -2VIA 4.0 ?
9 PsiBlast_PDB 84.0061% -89 - C1 -1KKP 4.4 ?
53 PsiBlast_CBE 83.9661% -89 - C1 -2VMN 4.5 ?
49 PsiBlast_CBE 83.9561% -91 - C1 -1YJY 4.1 ?
51 PsiBlast_CBE 83.9461% -89 - C1 -2VMP 4.3 ?
64 PsiBlast_CBE 83.9061% -89 - C1 -2VMY 4.1 ?
10 PsiBlast_PDB 83.9061% -91 - C1 -1KL1 4.5 ?
47 PsiBlast_CBE 83.8961% -90 - C1 -2VGS 4.3 ?
20 PsiBlast_PDB 83.8761% -89 - C1 -2W7F 3.3 ?
43 PsiBlast_CBE 83.8461% -89 - C1 -2VGW 4.1 ?
50 PsiBlast_CBE 83.7961% -88 - C1 -2VMQ 4.3 ?
48 PsiBlast_CBE 83.7561% -91 - C1 -1YJZ 3.8 ?
45 PsiBlast_CBE 83.6061% -90 - C1 -2VGU 4.3 ?
65 PsiBlast_CBE 83.5761% -92 - C1 -2VMY 4.1 ?
68 PsiBlast_CBE 83.5461% -90 - C1 -2VMV 4.3 ?
16 PsiBlast_PDB 83.5061% -89 - C1 -2VI9 3.9 ?
42 PsiBlast_CBE 83.4861% -89 - C1 -2W7G 3.4 ?
63 PsiBlast_CBE 83.4161% -91 - C1 -2VMZ 3.1 ?
8 PsiBlast_PDB 83.3861% -91 - C1 -1KKJ 3.2 ?
37 PsiBlast_CBE 83.1661% -89 - C1 -1KL2 5.0 ?
11 PsiBlast_PDB 83.1561% -91 - C1 -1KL2 4.0 ?
56 PsiBlast_CBE 83.0661% -90 - C1 -2W7K 4.2 ?
59 PsiBlast_CBE 82.9561% -89 - C1 -2VMU 4.1 ?
55 PsiBlast_CBE 82.9261% -90 - C1 -2W7L 4.4 ?
71 PsiBlast_CBE 82.7660% -87 - C1 -4WXF 5.4 GLYA_STRT1
69 PsiBlast_CBE 82.5860% -88 - C1 -4WXG 6.5 GLYA_STRT1
17 PsiBlast_PDB 82.4861% -90 - C1 -1YJS 4.4 ?
70 PsiBlast_CBE 82.1960% -89 - C1 -4WXG 6.0 GLYA_STRT1
44 PsiBlast_CBE 82.0061% -90 - C1 -2VGV 4.3 ?
58 PsiBlast_CBE 81.7461% -89 - C1 -2W7I 2.9 ?
72 PsiBlast_CBE 81.2560% -89 - C1 -4WXF 5.9 GLYA_STRT1
81 PsiBlast_CBE 79.9558% -88 - C1 -2DKJ 3.2 GLYA_THET8
80 PsiBlast_CBE 78.1858% -87 - C1 -2DKJ 3.3 GLYA_THET8
108 HHSearch 77.6857% -88 * C1 *2DKJ 3.2 GLYA_THET8
101 HHSearch 75.9246% -81 - C1 -1RV3 2.7 GLYC_RABIT
124 Fugue 75.2945% -84 - C1 -1BJ4 3.3 GLYC_HUMAN
87 PsiBlast_CBE 71.9946% -82 - C1 -4PVF 3.0 GLYM_HUMAN
86 PsiBlast_CBE 69.1246% -85 - C1 -4PVF 3.3 GLYM_HUMAN