@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4615: (2016-02-29 )
MTASEEKFTRQTLLDVQPLTPNLFTLRTSRDAGFRFRAGQFARLGVYKPSGSIVWRAYSMVSAPHDEFLDFFSIVVPDGEFTSELSRLREGDQLLVDRQAFGFLTLDRFVDGRDLWLLATGTGVAPFVSILQDFEVWERFESIKLVYSVRESKELAYRELIAGLAEREYLAEHAHKLQFIPVVTREQVPGCLNGRITTLIENGDLERAADLELTPEHSRVMLCGNPQMIEDTRAVLKARGMNLSLTRRPGQVAVENYW

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_A_4(2XNJ)
FENR_ECOLI
[Raw transfer]




NAP_B_14(2XNJ)
FENR_ECOLI
[Raw transfer]




A2P_A_3(2VNI)
?
[Raw transfer]




FAD_A_5(2BGJ)
?
[Raw transfer]




FAD_C_7(2BGJ)
?
[Raw transfer]




FAD_A_3(2QDX)
?
[Raw transfer]




FAD_A_3(2QDX)
?
[Raw transfer]




FAD_B_5(4K1X)
?
[Raw transfer]




FAD_A_2(4B4D)
?
[Raw transfer]




FAD_A_3(3CRZ)
?
[Raw transfer]




FAD_B_4(4FK8)
?
[Raw transfer]




FAD_D_11(2VNK)
?
[Raw transfer]




FAD_B_6(2BGJ)
?
[Raw transfer]




FAD_A_2(2VNJ)
?
[Raw transfer]




FAD_A_3(4FK8)
?
[Raw transfer]




FAD_C_9(2VNK)
?
[Raw transfer]




FAD_D_8(2BGJ)
?
[Raw transfer]




FAD_A_2(2VNH)
?
[Raw transfer]




FAD_B_2(1FDR)
FENR_ECOLI
[Raw transfer]




FAD_B_7(2VNK)
?
[Raw transfer]




FAD_A_5(2VNK)
?
[Raw transfer]




FAD_A_3(2BGI)
?
[Raw transfer]




FAD_B_5(3FPK)
?
[Raw transfer]




FAD_B_2(1FDR)
FENR_ECOLI
[Raw transfer]




FAD_A_2(2VNI)
?
[Raw transfer]




FAD_A_3(3FPK)
?
[Raw transfer]




FAD_A_3(2BGI)
?
[Raw transfer]




FAD_B_2(1A8P)
FENR_AZOVI
[Raw transfer]




GOL_A_6(3W5H)
NB5R3_PIG
[Raw transfer]




GOL_B_11(2EIX)
?
[Raw transfer]




21 PsiBlast_CBE 94.5643%-128 - C3 -3FPK 13.2 ?
1 PsiBlast_PDB 94.4943%-128 - C3 -3FPK 13.0 ?
55 HHSearch 93.2341%-122 - C3 -1FDR 12.6 FENR_ECOLI
2 PsiBlast_PDB 92.3642%-117 - C3 -2QDX 11.0 ?
3 PsiBlast_PDB 91.8542%-117 - C3 -3CRZ 10.8 ?
23 PsiBlast_CBE 91.4439%-125 - C3 -2XNJ 8.7 FENR_ECOLI
9 PsiBlast_PDB 91.4039%-124 - C3 -2XNJ 7.7 FENR_ECOLI
7 PsiBlast_PDB 91.3341%-125 - C3 -4B4D 11.0 ?
4 PsiBlast_PDB 91.2441%-126 - C3 -1FDR 12.6 FENR_ECOLI
61 HHSearch 91.0041%-115 * C3 *2QDX 11.1 ?
8 PsiBlast_PDB 90.4239%-120 - C3 -1A8P 8.7 FENR_AZOVI
26 PsiBlast_CBE 89.3835%-118 - C3 -2VNK 11.0 ?
25 PsiBlast_CBE 89.2635%-118 - C3 -2VNK 11.4 ?
29 PsiBlast_CBE 88.9835%-117 - C3 -2BGJ 11.1 ?
27 PsiBlast_CBE 88.9135%-118 - C3 -2VNK 10.9 ?
15 PsiBlast_PDB 88.6335%-118 - C3 -2VNK 11.5 ?
24 PsiBlast_CBE 88.4335%-114 - C3 -4K1X 11.9 ?
14 PsiBlast_PDB 88.4135%-119 - C3 -2VNJ 10.9 ?
30 PsiBlast_CBE 87.3535%-115 - C3 -2BGJ 11.1 ?
13 PsiBlast_PDB 87.3235%-115 - C3 -2VNI 10.7 ?
11 PsiBlast_PDB 87.3135%-117 - C3 -2BGJ 11.4 ?
22 PsiBlast_CBE 86.8339%-117 - C3 -4FK8 10.4 ?
28 PsiBlast_CBE 86.8235%-115 - C3 -2BGJ 10.7 ?
6 PsiBlast_PDB 86.5639%-113 - C3 -4FK8 10.5 ?
12 PsiBlast_PDB 86.0135%-114 - C3 -2VNH 10.4 ?
10 PsiBlast_PDB 85.8435%-114 - C3 -2BGI 11.3 ?
60 HHSearch 81.9132%-104 - C3 -2BGI 6.4 ?