@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4669: (2016-02-29 )
MSVRLSLPAPAKLNLFLHILGRRDDGYHELQTLFQFLDHGDELHFEARQDGQVRLHTEIAGVPHDSNLIVRAARGLQEASGSPQGVDIWLDKRLPMGGGIGGGSSDAATTLLALNHLWQLGWDEDRIAALGLRLGADVPVFTRGRAAFAEGVGEKLTPVDIPEPWYLVVVPQVLVSTAEIFSDPLLTRDSPAIKVRTVLEGDSRNDCQPVVERRYPEVRNALILLNKFVSARLTGTGGCVFGSFPNKAEADKVSALLPDHLQRFVAKGSNISMLHRKLETLV

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_4(1OJ4)
ISPE_ECOL6
[Raw transfer]



ATP_A_2(4ED4)
?
[Raw transfer]



ADP_B_4(2WW4)
ISPE_ECOLI
[Raw transfer]



ATP_A_3(4DXL)
?
[Raw transfer]



ADP_A_3(2WW4)
ISPE_ECOLI
[Raw transfer]



CDM_A_3(1OJ4)
ISPE_ECOL6
[Raw transfer]



CDM_A_3(2V2Z)
ISPE_AQUAE
[Raw transfer]



GVS_A_3(2VF3)
ISPE_AQUAE
[Raw transfer]



CDM_A_2(3PYE)
ISPE_MYCTU
[Raw transfer]



GOL_A_2(3PYD)
ISPE_MYCTU
[Raw transfer]



V12_A_11(2V2V)
ISPE_AQUAE
[Raw transfer]



C5P_A_2(4EMD)
?
[Raw transfer]



ADP_A_2(3PYG)
ISPE_MYCTU
[Raw transfer]
1 PsiBlast_PDB 98.8154% -99 - C1 -2WW4 - ISPE_ECOLI -
2 PsiBlast_PDB 98.4754%-103 - C1 -1OJ4 6.7 ISPE_ECOL6
21 PsiBlast_CBE 98.3654% -99 - C1 -2WW4 5.2 ISPE_ECOLI
22 HHSearch 98.1455% -98 - C1 -2WW4 5.2 ISPE_ECOLI
46 Fugue 77.9435% -88 - C1 -1UEK - ISPE_THET8 -
25 HHSearch 73.1336% -87 - C1 -1UEK - ISPE_THET8 -
3 PsiBlast_PDB 67.8939% -84 - C1 -1UEK - ISPE_THET8 -
48 Fugue 67.0016% -84 - C1 -1H72 - KHSE_METJA -
24 HHSearch 66.9428% -78 - C1 -3PYF - ISPE_MYCTU -
8 PsiBlast_PDB 66.1030% -87 - C1 -2V8P - ISPE_AQUAE -
28 HHSearch 65.7018% -83 - C1 -1H72 - KHSE_METJA -
23 HHSearch 65.3028% -78 - C1 -2V8P - ISPE_AQUAE -
6 PsiBlast_PDB 65.2330% -88 - C1 -2V2Z 8.2 ISPE_AQUAE
47 Fugue 65.1817% -78 - C1 -1H74 - KHSE_METJA -
7 PsiBlast_PDB 65.0630% -89 - C1 -2V34 - ISPE_AQUAE -
5 PsiBlast_PDB 64.5230% -87 - C1 -2V2V 6.4 ISPE_AQUAE
9 PsiBlast_PDB 64.4030% -87 - C1 -2VF3 5.3 ISPE_AQUAE
49 Fugue 63.5117% -77 - C1 -1FWK - KHSE_METJA -
4 PsiBlast_PDB 62.8830% -89 - C1 -2V2Q - ISPE_AQUAE -
33 HHSearch 56.5718% -71 - C1 -1KKH - MVK_METJA -
15 PsiBlast_PDB 50.9137% -67 - C1 -4ED4 6.3 ?
16 PsiBlast_PDB 49.7937% -64 - C1 -4EMD 3.9 ?
14 PsiBlast_PDB 47.0937% -63 - C1 -4DXL 6.2 ?
13 PsiBlast_PDB 45.4738% -54 - C1 -3PYG 3.8 ISPE_MYCTU
10 PsiBlast_PDB 45.3238% -55 - C1 -3PYD 1.7 ISPE_MYCTU
11 PsiBlast_PDB 44.8538% -55 - C1 -3PYE 3.5 ISPE_MYCTU