@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4672: (2016-02-29 )
MTAVQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGDWTRAMQKLHSQKA

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_A_9(4IKO)
?
[Raw transfer]




GOL_A_9(4HOY)
?
[Raw transfer]




GOL_A_9(4JY7)
?
[Raw transfer]




5AE_A_2(4QD3)
PTH_PSEAE
[Raw transfer]




3NZ_A_3(4QBK)
PTH_PSEAE
[Raw transfer]




0L1_A_3(4DHW)
PTH_PSEAE
[Raw transfer]




PML_B_4(4DJJ)
PTH_PSEAE
[Raw transfer]




0L1_B_4(4DHW)
PTH_PSEAE
[Raw transfer]




PML_A_3(4DJJ)
PTH_PSEAE
[Raw transfer]




GOL_B_8(4FNO)
PTH_PSEAE
[Raw transfer]




PEG_B_4(4ERX)
PTH_PSEAE
[Raw transfer]




PEG_A_3(4ERX)
PTH_PSEAE
[Raw transfer]




URI_A_2(4JX9)
?
[Raw transfer]




EDO_A_4(3NEA)
PTH_FRATT
[Raw transfer]




EDO_A_4(3NEA)
PTH_FRATT
[Raw transfer]




CTN_A_2(4JWK)
?
[Raw transfer]




TLA_A_3(4OLJ)
?
[Raw transfer]




BME_A_10(3KK0)
PTH_MYCS2
[Raw transfer]




PEG_A_9(3KK0)
PTH_MYCS2
[Raw transfer]




24 PsiBlast_CBE 99.57100%-113 - C2 -4DHW 3.2 PTH_PSEAE
3 PsiBlast_PDB 99.27100%-115 - C2 -4ERX 3.0 PTH_PSEAE
5 PsiBlast_PDB 98.78100%-114 - C2 -4JC4 - PTH_PSEAE -
21 PsiBlast_CBE 98.70100%-113 - C2 -4FNO 3.0 PTH_PSEAE
8 PsiBlast_PDB 98.49100%-111 - C2 -4QD3 4.1 PTH_PSEAE
2 PsiBlast_PDB 98.22100%-108 - C2 -4DJJ 2.8 PTH_PSEAE
23 PsiBlast_CBE 98.18100%-110 - C2 -4DJJ 3.2 PTH_PSEAE
6 PsiBlast_PDB 98.15100%-110 - C2 -4QAJ - PTH_PSEAE -
4 PsiBlast_PDB 97.82100%-112 - C2 -4FNO - PTH_PSEAE -
7 PsiBlast_PDB 97.79100%-110 - C2 -4QBK 6.7 PTH_PSEAE
1 PsiBlast_PDB 97.43100%-111 - C2 -4DHW 2.9 PTH_PSEAE
22 PsiBlast_CBE 97.42100%-110 - C2 -4ERX 2.2 PTH_PSEAE
9 PsiBlast_PDB 95.94100%-113 - C2 -4FYJ - PTH_PSEAE -
11 PsiBlast_PDB 83.5358%-110 - C2 -3VJR - PTH_ECOLI -
10 PsiBlast_PDB 83.1758%-104 - C2 -2PTH - PTH_ECOLI -
44 HHSearch 82.8858%-104 - C2 -2PTH - PTH_ECOLI -
27 PsiBlast_CBE 82.2856%-101 - C2 -4P7B - ? -
26 PsiBlast_CBE 81.7857% -98 - C2 -4OLJ 2.7 ?
18 PsiBlast_PDB 81.5158% -97 - C2 -4JX9 4.1 ?
19 PsiBlast_PDB 81.3158% -98 - C2 -4LWQ - ? -
17 PsiBlast_PDB 81.2458%-101 - C2 -4JWK 3.5 ?
15 PsiBlast_PDB 80.6058%-100 - C2 -4IKO Error ?
16 PsiBlast_PDB 80.4858% -99 - C2 -4JY7 Error ?
14 PsiBlast_PDB 80.0558% -98 - C2 -4HOY Error ?
45 HHSearch 77.5645%-109 - C2 -3NEA 3.0 PTH_FRATT
29 PsiBlast_CBE 77.3744%-109 - C2 -3NEA 3.0 PTH_FRATT
31 PsiBlast_CBE 72.0738%-101 - C2 -3KK0 2.8 PTH_MYCS2