@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4694: (2016-02-29 )
MRVFYDKDCDLSIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYNQVVPRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQDASGNAKNVALSYACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAYFECLHELKLIVDLMYEGGIANMNYSISNNAEYGEYVTGPEVINAESRAAMRNALKRIQDGEYAKMFITEGAANYPSMTAYRRNNAAHPIEQIGEKLRAMMPWIAANKIVDKSKN

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_A_3(4KQW)
?
[Raw transfer]



NAD_B_10(4KQX)
?
[Raw transfer]



NDP_B_11(4XDZ)
?
[Raw transfer]



NDP_A_6(4TSK)
?
[Raw transfer]



NAD_A_3(4KQX)
?
[Raw transfer]



HIO_B_9(4KQX)
?
[Raw transfer]



HIO_B_9(4XDY)
?
[Raw transfer]



40E_B_14(4XDZ)
?
[Raw transfer]



HIO_A_4(4KQX)
?
[Raw transfer]



PEG_B_10(3FR8)
ILV5_ORYSJ
[Raw transfer]



PE4_A_6(3FR8)
ILV5_ORYSJ
[Raw transfer]
62 Fugue 96.18100%-111 - C3 -1NP3 - ILVC_PSEAE -
1 PsiBlast_PDB 96.18100%-111 - C3 -1NP3 - ILVC_PSEAE -
73 HHSearch 96.17100%-111 - C3 -1NP3 - ILVC_PSEAE -
21 PsiBlast_CBE 93.5293%-111 - C3 -4XIY - ILVC_AZOVD -
22 PsiBlast_CBE 93.2393%-115 - C3 -4XIY - ILVC_AZOVD -
23 PsiBlast_CBE 91.8893%-111 - C3 -4XIY - ILVC_AZOVD -
2 PsiBlast_PDB 86.5293%-130 - C- -4XIY - ILVC_AZOVD -
3 PsiBlast_PDB 84.9660%-105 - C3 -4KQW 10.5 ?
25 PsiBlast_CBE 83.7660%-103 - C3 -4KQX 9.3 ?
5 PsiBlast_PDB 83.2058%-103 - C3 -4TSK 9.7 ?
4 PsiBlast_PDB 83.1460%-102 - C3 -4KQX 9.5 ?
7 PsiBlast_PDB 80.5447%-101 - C3 -4XDZ - ? -
27 PsiBlast_CBE 80.1947% -99 - C3 -4XDZ 8.6 ?
8 PsiBlast_PDB 80.1947%-103 - C3 -4XEH - ? -
24 PsiBlast_CBE 78.5460% -37 - C- -4KQW - ? -
26 PsiBlast_CBE 77.9945% -95 - C3 -4XDY 3.5 ?
6 PsiBlast_PDB 77.5045% -98 - C3 -4XDY - ? -
9 PsiBlast_PDB 70.3533% -92 - C3 -1YRL - ILVC_ECOLI -
74 HHSearch 68.6230% -91 - C3 -3FR7 - ILV5_ORYSJ -
31 PsiBlast_CBE 61.1134% -96 - C3 -3FR7 - ILV5_ORYSJ -
30 PsiBlast_CBE 60.2634% -91 - C3 -3FR8 3.0 ILV5_ORYSJ
12 PsiBlast_PDB 60.0734% -90 - C3 -3FR8 2.7 ILV5_ORYSJ