@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4706: (2016-02-29 )
MLRVENLSIRRGGKTVLEGLELELRPGEMLGVLGPNGAGKSTLLGALCGELEPAEGLVLLDERGLDDWPGVARAQRLAVLPQSSSLGFAFPVEAVVGFGRLPHSSGRERDVQIVAEALAAADASHLAGRSYLALSGGERQRVHLARVLAQLWPGEPGQVLLLDEPTSALDPLHQHTTLQAVHDFARRGASVLVILHDLNLAARYCDRLLLLQNGRPHLLGTPEEVLRPEPLRAVFGLEVLVQRHPERGHPLIVAR

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_J_5(4YMU)
?
[Raw transfer]



ANP_C_9(4R9U)
BTUD_ECOLI
[Raw transfer]



V4O_C_5(1L7V)
BTUD_ECOLI
[Raw transfer]



ADP_C_11(4HLU)
ECFA1_THEMA
[Raw transfer]



ANP_D_11(4R9U)
BTUD_ECOLI
[Raw transfer]



ADP_A_3(1JJ7)

[Raw transfer]



ADP_A_3(3TIF)
Y796_METJA
[Raw transfer]



ADP_B_8(3TIF)
Y796_METJA
[Raw transfer]
21 PsiBlast_CBE 96.0843%-128 - C1 -4G1U - HMUV_YERPE -
1 PsiBlast_PDB 94.6743%-129 - C1 -4G1U - HMUV_YERPE -
54 PsiBlast_CBE 73.0933%-109 - C1 -3FVQ - FBPC_NEIG1 -
53 PsiBlast_CBE 71.9833%-112 - C1 -3FVQ - FBPC_NEIG1 -
2 PsiBlast_PDB 71.7133%-120 - C1 -2NQ2 - Y1470_HAEIN -
90 HHSearch 70.6030%-113 - C1 -1B0U - HISP_SALTY -
74 HHSearch 69.1530%-111 - C1 -2IT1 - ? -
73 HHSearch 67.8632%-108 - C1 -3FVQ - FBPC_NEIG1 -
79 HHSearch 67.6334%-111 - C1 -3D31 - ? -
23 PsiBlast_CBE 67.0735%-117 - C1 -4DBL - BTUD_ECOLI -
75 HHSearch 66.9829%-116 * C1 *3TUI - METN_ECOLI -
77 HHSearch 66.9629%-117 - C1 -3RLF - MALK_ECOLI -
24 PsiBlast_CBE 66.8535%-116 - C1 -4DBL - BTUD_ECOLI -
19 PsiBlast_PDB 66.8129%-123 - C1 -4YMW - ? -
11 PsiBlast_PDB 66.6132%-113 - C1 -4WBS - ? -
17 PsiBlast_PDB 66.3729%-122 - C1 -4YMU 5.7 ?
10 PsiBlast_PDB 66.3133%-101 - C1 -3D31 - ? -
6 PsiBlast_PDB 66.2335%-116 - C1 -4R9U 4.3 BTUD_ECOLI
4 PsiBlast_PDB 66.2235%-116 - C1 -4DBL - BTUD_ECOLI -
22 PsiBlast_CBE 65.8735%-116 - C1 -4DBL - BTUD_ECOLI -
25 PsiBlast_CBE 65.6235%-115 - C1 -4R9U 3.8 BTUD_ECOLI
8 PsiBlast_PDB 61.7537%-114 - C1 -1L7V 2.4 BTUD_ECOLI
35 PsiBlast_CBE 61.2531%-107 - C1 -4HLU 5.6 ECFA1_THEMA
37 PsiBlast_CBE 60.6431%-105 - C1 -3TIF 4.1 Y796_METJA
36 PsiBlast_CBE 56.4431%-109 - C1 -3TIF 4.2 Y796_METJA
52 PsiBlast_CBE 56.0031%-102 - C1 -1JJ7 4.3