@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4722: (2016-02-29 )
MATSYSARSRAIEPFHVMALLARANELQAAGHDVIHLEIGEPDFTTAEPIVEAGRAALAAGHTRYTAARGLPALREAIAKFYGERYGVDLDPQRVLVTPGGSGALLLASSLLVDPGRHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPDLIERHWDSDSVGALVATPANPTGTLLDRDELAGLSGALKARGGHLVVDEIYHGLTYGVDAASVLEVDDDAFVLNSFSKYFGMTGWRLGWLVAPTAAVPELEKLAQNLYISAPSMAQQAALACFEPTTIAILEERREEFARRRDFLLPALRELGFGIAVEPEGAFYLYADISAFGGDAYAFCKHFIETEHVAFTPGLDFGRHQAGHHVRFAYTQNLPRLQEAVERIARGLKNWRP

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DCS_A_3(3TCM)
ALA2_HORVU
[Raw transfer]




PMP_A_3(1W7N)
KAT1_HUMAN
[Raw transfer]




PLP_E_5(1GDE)
?
[Raw transfer]




EPE_G_7(2DOU)
?
[Raw transfer]




PLP_A_12(1O4S)
AAT_THEMA
[Raw transfer]




PLP_B_13(1O4S)
AAT_THEMA
[Raw transfer]




PLP_A_12(1O4S)
AAT_THEMA
[Raw transfer]




PLP_F_6(1GCK)
AAT_THET8
[Raw transfer]




PLP_A_3(1GD9)
?
[Raw transfer]




PMP_A_4(3E2Y)
KAT3_MOUSE
[Raw transfer]




PLP_A_5(1B5O)
AAT_THET8
[Raw transfer]




PLP_A_3(1J32)
?
[Raw transfer]




PLP_A_3(1GD9)
?
[Raw transfer]




ASP_D_4(1GCK)
AAT_THET8
[Raw transfer]




PLP_B_6(1B5P)
AAT_THET8
[Raw transfer]




GLU_C_3(1GDE)
?
[Raw transfer]




PLP_A_5(1B5P)
AAT_THET8
[Raw transfer]




PLP_A_3(1J32)
?
[Raw transfer]




PLP_B_6(5BJ4)
AAT_THET8
[Raw transfer]




PLP_B_6(1B5O)
AAT_THET8
[Raw transfer]




PLP_A_5(1B5P)
AAT_THET8
[Raw transfer]




PLP_A_5(5BJ4)
AAT_THET8
[Raw transfer]




IAC_A_3(3FVU)
KAT1_HUMAN
[Raw transfer]




ASP_C_3(1GCK)
AAT_THET8
[Raw transfer]




PLP_E_5(1GCK)
AAT_THET8
[Raw transfer]




DPN_A_3(1W7M)
KAT1_HUMAN
[Raw transfer]




MES_A_3(3JTX)
?
[Raw transfer]




35 PsiBlast_CBE 86.6833%-110 - C1 -1B5O 4.6 AAT_THET8
8 PsiBlast_PDB 86.6733%-113 - C1 -1B5P 4.2 AAT_THET8
46 HHSearch 86.6541%-107 - C1 -3H14 - ? -
34 PsiBlast_CBE 85.0133%-112 - C1 -1B5P 4.4 AAT_THET8
11 PsiBlast_PDB 84.6033%-112 - C1 -1BKG - AAT_THET8 -
9 PsiBlast_PDB 84.5733%-112 - C1 -1B5O 4.5 AAT_THET8
40 PsiBlast_CBE 84.5033%-112 - C1 -1BKG - AAT_THET8 -
13 PsiBlast_PDB 84.4933%-112 - C1 -1BJW - AAT_THET8 -
41 PsiBlast_CBE 84.4833%-112 - C1 -1BKG - AAT_THET8 -
39 PsiBlast_CBE 84.4733%-112 - C1 -1BKG - AAT_THET8 -
7 PsiBlast_PDB 83.6633%-111 - C1 -1GCK 4.9 AAT_THET8
3 PsiBlast_PDB 83.5934%-109 - C1 -1O4S 3.9 AAT_THEMA
27 PsiBlast_CBE 83.3133%-112 - C1 -1GC3 - AAT_THET8 -
33 PsiBlast_CBE 82.7033%-108 - C1 -1GCK 5.8 AAT_THET8
31 PsiBlast_CBE 82.5533%-111 - C1 -1GC3 - AAT_THET8 -
45 HHSearch 82.4634%-105 - C1 -1O4S 3.9 AAT_THEMA
21 PsiBlast_CBE 82.0534%-108 - C1 -1O4S 3.9 AAT_THEMA
32 PsiBlast_CBE 81.9533%-113 - C1 -1GC3 - AAT_THET8 -
5 PsiBlast_PDB 81.6233%-110 - C1 -1GC4 - AAT_THET8 -
4 PsiBlast_PDB 81.6033%-111 - C1 -1GC3 - AAT_THET8 -
22 PsiBlast_CBE 80.1233%-111 - C1 -5BJ4 4.6 AAT_THET8
43 HHSearch 79.9633%-105 * C1 *1B5P 4.2 AAT_THET8
44 HHSearch 79.7530%-108 - C1 -1GD9 4.0 ?
6 PsiBlast_PDB 78.0233%-112 - C1 -5BJ4 4.6 AAT_THET8
42 HHSearch 76.9130%-106 - C1 -1J32 4.1 ?
14 PsiBlast_PDB 73.4430%-103 - C1 -1GDE 5.4 ?
12 PsiBlast_PDB 72.9830%-103 - C1 -1J32 4.1 ?
15 PsiBlast_PDB 72.6130%-104 - C1 -1GD9 4.0 ?