@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4742: (2016-03-01 )
MAQVKRIRRSISGILVLDKPRGMSSNQALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFGEATKFSQYLLDADKGYETVMRMGITTTTGDAEGELLAERDVTVGRDDLEQALPRFRGDIEQVPPMYSALKKDGQPLYKLARAGEVVEREARSVTITRLDLLSFEPPCATLAVSCSKGTYVRTLVEDLGQVLGCGAHVAALRRTQAGPFALAQAITLETLERVHAEGGPEALDQFLMPEDSGLLHWPVLQLSEHSAYYWLHGQPVRAPEAPKFGWLRVQDHTGRFIGIGEVTDDGRIAPRRLIRS

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_E_5(3LWO)
TRUB_PYRFU
[Raw transfer]

-

URA_A_2(1KSK)
RSUA_ECOLI
[Raw transfer]




BU1_A_4(1VIO)
RSUA_HAEIN
[Raw transfer]




NACID_F_6(3HAY)
TRUB_PYRFU
[Raw transfer]

-

NACID_F_5(3HAX)
TRUB_PYRFU
[Raw transfer]

-

CHAIN_E_5(3LWP)
TRUB_PYRFU
[Raw transfer]

-

CHAIN_E_5(3LWQ)
TRUB_PYRFU
[Raw transfer]

-

NACID_B_1(1K8W)
TRUB_ECOLI
[Raw transfer]

-

NACID_B_1(1K8W)
TRUB_ECOLI
[Raw transfer]

-

NACID_B_1(1K8W)
TRUB_ECOLI
[Raw transfer]

-

NACID_E_5(3LWR)
TRUB_PYRFU
[Raw transfer]

-

NACID_B_1(1ZL3)
TRUB_ECOLI
[Raw transfer]

-

NACID_E_5(3LWV)
TRUB_PYRFU
[Raw transfer]

-

NACID_E_5(3HJW)
TRUB_PYRFU
[Raw transfer]

-

NACID_E_5(3HJY)
TRUB_PYRFU
[Raw transfer]

-

46 Fugue 97.4251% -97 - C3 -1K8W 17.7 TRUB_ECOLI
26 HHSearch 97.1351% -96 - C3 -1K8W 17.9 TRUB_ECOLI
2 PsiBlast_PDB 95.8851%-100 - C3 -1K8W 17.8 TRUB_ECOLI
3 PsiBlast_PDB 94.2851% -98 - C3 -1ZL3 13.8 TRUB_ECOLI
1 PsiBlast_PDB 92.4551%-109 - C3 -1R3F - TRUB_ECOLI -
47 Fugue 83.0931% -89 - C3 -1R3E - TRUB_THEMA -
27 HHSearch 80.1033% -89 - C3 -1R3E - TRUB_THEMA -
7 PsiBlast_PDB 79.7732% -92 - C3 -1ZE2 - TRUB_THEMA -
6 PsiBlast_PDB 79.2632% -87 - C3 -1R3E - TRUB_THEMA -
5 PsiBlast_PDB 79.0832% -85 - C3 -1ZE1 - TRUB_THEMA -
8 PsiBlast_PDB 78.5332% -88 - C3 -2AB4 - TRUB_THEMA -
23 PsiBlast_CBE 78.2332% -81 - C3 -1ZE1 - TRUB_THEMA -
29 HHSearch 77.9833% -95 * C3 *2APO - TRUB_METJA -
22 PsiBlast_CBE 77.6832% -83 - C3 -1ZE1 - TRUB_THEMA -
28 HHSearch 77.2438%-103 - C3 -1SGV - TRUB_MYCTU -
21 PsiBlast_CBE 75.9632% -89 - C3 -1ZE1 - TRUB_THEMA -
31 HHSearch 74.1231%-107 - C3 -2AUS - TRUB_PYRAB -
25 PsiBlast_CBE 74.0431%-102 - C3 -2APO - TRUB_METJA -
13 PsiBlast_PDB 72.9430%-113 - C3 -3LWO 5.5 TRUB_PYRFU
30 HHSearch 72.8527% -93 - C3 -3U28 - CBF5_YEAST -
16 PsiBlast_PDB 72.5930%-114 - C3 -3LWR 3.2 TRUB_PYRFU
11 PsiBlast_PDB 72.4630%-108 - C3 -3HAX 8.3 TRUB_PYRFU
14 PsiBlast_PDB 72.4430%-114 - C3 -3LWP 4.8 TRUB_PYRFU
19 PsiBlast_PDB 71.8430%-109 - C3 -3HJW 9.1 TRUB_PYRFU
12 PsiBlast_PDB 71.1230%-104 - C3 -3HAY 5.5 TRUB_PYRFU
17 PsiBlast_PDB 71.0030%-113 - C3 -3LWV 3.3 TRUB_PYRFU
15 PsiBlast_PDB 70.8430%-110 - C3 -3LWQ 3.7 TRUB_PYRFU
20 PsiBlast_PDB 70.7930%-117 - C3 -3HJY 3.4 TRUB_PYRFU