@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4759: (2016-03-01 )
MRRIAVVGAAGRMGKNLIEAVQQTGGAAGLTAAVDRPDSTLVGADAGELAGLGRIGVPLSGDLGKVCEEFDVLIDFTHPSVTLKNIEQCRKARRAMVIGTTGFSADEKLLLAEAAKDIPIVFAANFSVGVNLCLKLLDTAARVLGDEVDIEIIEAHHRHKVDAPSGTALRMGEVVAQALGRDLQEVAVYGREGQTGARARETIGFATVRAGDVVGDHTVLFAAEGERVEITHKASSRMTFARGAVRAALWLEGKENGLYDMQDVLGLR

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_E_5(1DIH)
?
[Raw transfer]




NDP_E_5(1DIH)
DAPB_ECOLI
[Raw transfer]




NDP_E_5(1DIH)
DAPB_ECOLI
[Raw transfer]




NAD_A_3(4YWJ)
DAPB_PSEAE
[Raw transfer]




NAD_A_17(1VM6)
DAPB_THEMA
[Raw transfer]




NHD_E_5(1DRW)
DAPB_ECOLI
[Raw transfer]




NAD_E_5(1P9L)
DAPB_MYCTU
[Raw transfer]




NAD_B_18(1VM6)
DAPB_THEMA
[Raw transfer]




NAD_E_5(1DRU)
DAPB_ECOLI
[Raw transfer]




NAD_B_7(4YWJ)
DAPB_PSEAE
[Raw transfer]




NAD_D_20(1VM6)
DAPB_THEMA
[Raw transfer]




NAP_A_5(3IJP)
DAPB_BARHE
[Raw transfer]




NAD_A_17(1VM6)
DAPB_THEMA
[Raw transfer]




NAD_D_12(1ARZ)
DAPB_ECOLI
[Raw transfer]




NAD_E_5(1P9L)
DAPB_MYCTU
[Raw transfer]




A3D_E_5(1DRV)
DAPB_ECOLI
[Raw transfer]




NAD_I_9(1P9L)
DAPB_MYCTU
[Raw transfer]




NAD_C_10(1ARZ)
DAPB_ECOLI
[Raw transfer]




NDP_E_5(1C3V)
DAPB_MYCTU
[Raw transfer]




NDP_G_7(1C3V)
DAPB_MYCTU
[Raw transfer]




NAD_B_8(1ARZ)
DAPB_ECOLI
[Raw transfer]




GOL_B_18(3QY9)
DAPB_STAAC
[Raw transfer]




PG4_C_22(1VM6)
DAPB_THEMA
[Raw transfer]




21 PsiBlast_CBE 99.68100%-133 - C2 -4YWJ 10.5 DAPB_PSEAE
1 PsiBlast_PDB 98.66100%-135 - C2 -4YWJ 11.4 DAPB_PSEAE
4 PsiBlast_PDB 85.3362%-118 - C2 -1DRU 6.1 DAPB_ECOLI
2 PsiBlast_PDB 84.7962%-123 - C2 -1ARZ - DAPB_ECOLI -
6 PsiBlast_PDB 84.6062%-117 - C2 -1DRW 8.6 DAPB_ECOLI
7 PsiBlast_PDB 84.4655%-121 - C2 -4F3Y - DAPB_BURTA -
3 PsiBlast_PDB 84.3262%-122 - C2 -1DIH 9.2 DAPB_ECOLI
25 PsiBlast_CBE 84.2455%-122 - C2 -4F3Y - DAPB_BURTA -
5 PsiBlast_PDB 83.9862%-120 - C2 -1DRV 7.5 DAPB_ECOLI
45 HHSearch 83.9363%-120 - C2 -1DIH 9.2 DAPB_ECOLI
24 PsiBlast_CBE 82.7162%-119 - C2 -1ARZ 6.6 DAPB_ECOLI
22 PsiBlast_CBE 81.7062%-116 - C2 -1ARZ 6.3 DAPB_ECOLI
23 PsiBlast_CBE 81.6062%-121 - C2 -1ARZ 5.6 DAPB_ECOLI
26 PsiBlast_CBE 80.9143%-116 - C2 -3IJP - DAPB_BARHE -
8 PsiBlast_PDB 79.9843%-117 - C2 -3IJP 10.3 DAPB_BARHE
29 PsiBlast_CBE 71.3532%-129 - C2 -1VM6 9.6 DAPB_THEMA
64 Fugue 69.7533%-111 - C2 -3QY9 - DAPB_STAAC -
28 PsiBlast_CBE 69.5632%-132 - C2 -1VM6 2.0 DAPB_THEMA
27 PsiBlast_CBE 69.4832%-126 - C2 -1VM6 11.4 DAPB_THEMA
47 HHSearch 69.4732%-111 - C2 -3QY9 - DAPB_STAAC -
9 PsiBlast_PDB 68.7832%-125 - C2 -1VM6 9.9 DAPB_THEMA
44 HHSearch 67.7238%-115 - C2 -1VM6 10.3 DAPB_THEMA
46 HHSearch 62.6633%-106 * C2 *1P9L 10.0 DAPB_MYCTU
32 PsiBlast_CBE 60.6439%-123 - C2 -3QY9 2.9 DAPB_STAAC
12 PsiBlast_PDB 56.0132% -88 - C2 -1C3V 10.4 DAPB_MYCTU
35 PsiBlast_CBE 55.7732% -89 - C2 -1C3V 9.9 DAPB_MYCTU
34 PsiBlast_CBE 53.9932% -84 - C2 -1P9L 10.5 DAPB_MYCTU
13 PsiBlast_PDB 53.2732% -83 - C2 -1P9L 10.0 DAPB_MYCTU
65 Fugue 51.2372% -95 - C2 -1DIH Error ?