@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4786: (2016-03-01 )
MTDRYIAFANSPVGRRLVGAVGLPSPLRLERWQAGRVRPVDGPLVIGGSGALAEAVLPFAGKLTDAVFAAVDGQFELPRWTAEHSPRAKAVLFDASGLTRFEQLVALRDFFQPVLKGLDKCPKVVVLGRPPESLKDPVTASVQRSLEGFTRSLGKEIRRGGNVQLLYVGKGAEDQLEGALRFFLSPKSAYVSGQVIRLAANSAQVHDWSKPLAGQRALVTGAARGIGAAIAETLARDGAEVVLLDVPPAREALEGLAARLGGRAVALDICAADAGQQLVEALPEGVDIVVHNAGITRDKTLAKMSSDFWNSVINVNLNAPQVLTQALLDGGKLHDNGRVVLLASISGIAGNLGQSNYAVSKAGLIGLAQAWAPALGKRGITINAVAPGFIETQMTAAIPLTIREAGRRMNSMSQGGLPQDVAETVAWFAQPSSGAVSGQVLRVCGQSLLGA

Atome Classification :

(35 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_B_16(4I08)
FABG_VIBCH
[Raw transfer]



NAP_A_8(3RSH)
FABG_VIBCH
[Raw transfer]



NDP_A_8(4I08)
FABG_VIBCH
[Raw transfer]



NAP_B_19(3RSH)
FABG_VIBCH
[Raw transfer]



NAP_D_7(4JRO)
?
[Raw transfer]



NAP_C_6(4JRO)
?
[Raw transfer]



NAP_A_13(1Q7B)
FABG_ECOLI
[Raw transfer]



NAP_B_14(1Q7B)
FABG_ECOLI
[Raw transfer]



NAP_D_16(1Q7B)
FABG_ECOLI
[Raw transfer]



NAP_C_15(1Q7B)
FABG_ECOLI
[Raw transfer]



CAA_B_7(4NBU)
?
[Raw transfer]



EDO_B_22(3RRO)
FABG_VIBCH
[Raw transfer]



NDP_B_6(4WK6)
?
[Raw transfer]



HXC_A_3(3V1U)
?
[Raw transfer]



1PE_B_5(2PNF)
FABG_AQUAE
[Raw transfer]



1PE_A_6(2PNF)
FABG_AQUAE
[Raw transfer]



EDO_A_7(4I08)
FABG_VIBCH
[Raw transfer]



PGE_A_8(3RRO)
FABG_VIBCH
[Raw transfer]
5 PsiBlast_PDB 90.7950% -94 - C2 -4FW8 - ? -
1 PsiBlast_PDB 90.3750% -95 - C2 -3U0B - ? -
26 PsiBlast_CBE 89.5550% -94 - C2 -3Q6I - ? -
22 PsiBlast_CBE 89.3250% -96 - C2 -4FW8 - ? -
6 PsiBlast_PDB 88.1750% -93 - C2 -3Q6I - ? -
24 PsiBlast_CBE 87.9650% -93 - C2 -4FW8 - ? -
25 PsiBlast_CBE 87.9150% -94 - C2 -3Q6I - ? -
4 PsiBlast_PDB 87.5050% -94 - C2 -3V1U 4.1 ?
27 PsiBlast_CBE 87.2250% -95 - C2 -3Q6I - ? -
3 PsiBlast_PDB 87.1750% -92 - C2 -3V1T - ? -
23 PsiBlast_CBE 86.8350% -92 - C2 -4FW8 - ? -
126 Fugue 84.4451%-101 - C2 -3LLS - ? -
21 PsiBlast_CBE 83.9550%-101 - C2 -3LLS - ? -
104 HHSearch 83.8051% -86 - C2 -3U0B - ? -
2 PsiBlast_PDB 83.5350%-100 - C2 -3LLS - ? -
49 PsiBlast_CBE 58.4237% -91 - C2 -2PNF 1.7 FABG_AQUAE
14 PsiBlast_PDB 58.1540% -94 - C2 -2UVD - ? -
102 PsiBlast_CBE 56.6438% -96 - C2 -4BNV - FABG_PSEAE -
39 PsiBlast_CBE 55.2938%-106 - C2 -3TZC - ? -
20 PsiBlast_PDB 55.1537% -88 - C2 -2P68 - FABG_AQUAE -
12 PsiBlast_PDB 54.2638% -90 - C2 -4I08 7.9 FABG_VIBCH
19 PsiBlast_PDB 54.1137% -90 - C2 -2PNF 1.9 FABG_AQUAE
36 PsiBlast_CBE 53.6438% -86 - C2 -4I08 6.9 FABG_VIBCH
33 PsiBlast_CBE 53.1739% -93 - C2 -4WK6 5.0 ?
11 PsiBlast_PDB 52.8538% -87 - C2 -3RRO 2.0 FABG_VIBCH
37 PsiBlast_CBE 52.4338% -86 - C2 -3RSH 7.6 FABG_VIBCH
10 PsiBlast_PDB 52.4038% -88 - C2 -3RSH 8.5 FABG_VIBCH
30 PsiBlast_CBE 51.2039% -85 - C2 -4NBU 4.5 ?
38 PsiBlast_CBE 50.8438% -86 - C2 -3RRO 2.6 FABG_VIBCH
55 PsiBlast_CBE 49.0037% -86 - C2 -4JRO 9.4 ?
52 PsiBlast_CBE 48.4338% -84 - C2 -1Q7B 6.9 FABG_ECOLI
53 PsiBlast_CBE 47.4738% -82 - C2 -1Q7B 6.2 FABG_ECOLI
51 PsiBlast_CBE 46.6938% -82 - C2 -1Q7B 6.0 FABG_ECOLI
50 PsiBlast_CBE 46.5638% -82 - C2 -1Q7B 7.9 FABG_ECOLI
54 PsiBlast_CBE 46.4537% -84 - C2 -4JRO 8.2 ?