@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4829: (2016-03-01 )
MMESYDVIVIGAGPGGYNAAIRAGQLGLKVACVEGRETLGGTCLNVGCMPSKALLHASELYAAASGGEFARLGIRVSPELDLAQMMKQKDESVAALTRGVEFLFRKHKVQWIKGWARLQGEGRVGVALADGGHAQLEARDIVIATGSEPAPLPGVPVDNQRILDSTGALELVEVPRHLVVIGAGVIGLELGSVWRRLGAQVTVLEYLERICPGLDGETARTLQRALTRQGMRFRLGTRVVAARSGEQGVELDLQPAAGGATESLQADYVLVAIGRRPYTEGLGLETVGLASDRRGMLENQGQRSAAPGVWVIGDVTSGPMLAHKAEEEAIVCIERIAGHAAEMNAEVIPSVIYTQPEVASVGLGEEQLQAARREYKVGRFPFSANSRAKINHESEGFIKILSDARSDQVLGVHMIGPGVSEMIGEACVAMEFSASAEDLALTCHPHPTRSEALRQAAMDVHGRAMQN

Atome Classification :

(47 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_7(2YQU)
?
[Raw transfer]




FAD_B_8(2YQU)
?
[Raw transfer]




FAD_A_7(2YQU)
?
[Raw transfer]




FAD_B_4(3LAD)
DLDH_AZOVI
[Raw transfer]




FAD_A_4(1EBD)
DLDH1_GEOSE
[Raw transfer]




FAD_A_3(1LPF)
DLDH_PSEFL
[Raw transfer]




FAD_B_4(1LPF)
DLDH_PSEFL
[Raw transfer]




FAD_A_4(2EQ7)
?
[Raw transfer]




FAD_C_3(1BHY)
?
[Raw transfer]




FAD_C_3(1OJT)
?
[Raw transfer]




FAD_A_3(2A8X)
DLDH_MYCTU
[Raw transfer]




FAD_A_3(3URH)
?
[Raw transfer]




FAD_C_3(1OJT)
?
[Raw transfer]




FAD_B_6(2EQ7)
?
[Raw transfer]




FAD_A_3(3URH)
?
[Raw transfer]




FAD_B_5(3II4)
DLDH_MYCTU
[Raw transfer]




FAD_B_4(2EQ6)
?
[Raw transfer]




FAD_A_3(2QAE)
DLDH_TRYCR
[Raw transfer]




FAD_D_4(1JEH)
DLDH_YEAST
[Raw transfer]




FAD_B_5(1V59)
DLDH_YEAST
[Raw transfer]




FAD_A_3(3II4)
DLDH_MYCTU
[Raw transfer]




FAD_A_3(3LAD)
DLDH_AZOVI
[Raw transfer]




FAD_A_3(2QAE)
DLDH_TRYCR
[Raw transfer]




FAD_A_3(2EQ6)
?
[Raw transfer]




FAD_A_4(1V59)
DLDH_YEAST
[Raw transfer]




FAD_B_5(1EBD)
DLDH1_GEOSE
[Raw transfer]




FAD_B_4(2QAE)
DLDH_TRYCR
[Raw transfer]




FAD_A_3(3LAD)
DLDH_AZOVI
[Raw transfer]




FAD_A_4(1EBD)
DLDH1_GEOSE
[Raw transfer]




FAD_A_3(2EQ6)
?
[Raw transfer]




FAD_C_3(1LVL)
DLDH1_PSEPU
[Raw transfer]




FAD_A_4(1V59)
DLDH_YEAST
[Raw transfer]




FAD_B_11(4JDR)
DLDH_ECOLI
[Raw transfer]




FAD_A_3(4JDR)
DLDH_ECOLI
[Raw transfer]




FAD_A_2(4YWO)
?
[Raw transfer]




FAD_C_3(1LVL)
DLDH1_PSEPU
[Raw transfer]




3II_A_4(3II4)
DLDH_MYCTU
[Raw transfer]




3II_B_6(3II4)
DLDH_MYCTU
[Raw transfer]




103 HHSearch 95.5153%-104 - C1 -3URH 12.7 ?
7 PsiBlast_PDB 95.4151%-107 - C1 -3URH 12.7 ?
106 HHSearch 93.5348% -97 - C1 -1V59 13.2 DLDH_YEAST
104 HHSearch 93.3750%-101 - C1 -1ZMD - DLDH_HUMAN -
9 PsiBlast_PDB 93.2447% -95 - C1 -1V59 13.2 DLDH_YEAST
4 PsiBlast_PDB 93.1650%-103 - C1 -1ZMD - DLDH_HUMAN -
105 HHSearch 93.1449%-101 * C1 *2QAE 13.1 DLDH_TRYCR
2 PsiBlast_PDB 92.4850%-101 - C1 -3RNM - DLDH_HUMAN -
57 PsiBlast_CBE 92.3047% -97 - C1 -1V59 13.3 DLDH_YEAST
28 PsiBlast_CBE 92.2250%-102 - C1 -1ZY8 - DLDH_HUMAN -
59 PsiBlast_CBE 92.2150%-107 - C1 -2YQU 12.9 ?
11 PsiBlast_PDB 92.0650%-107 - C1 -2YQU 13.1 ?
31 PsiBlast_CBE 91.8850%-101 - C1 -2F5Z - DLDH_HUMAN -
58 PsiBlast_CBE 91.8147% -96 - C1 -1JEH 13.7 DLDH_YEAST
38 PsiBlast_CBE 91.7550%-101 - C1 -2F5Z - DLDH_HUMAN -
24 PsiBlast_CBE 91.7250%-104 - C1 -1ZY8 - DLDH_HUMAN -
8 PsiBlast_PDB 91.6747% -97 - C1 -1JEH - DLDH_YEAST -
37 PsiBlast_CBE 91.5950% -99 - C1 -2F5Z - DLDH_HUMAN -
26 PsiBlast_CBE 91.4950%-103 - C1 -1ZY8 - DLDH_HUMAN -
40 PsiBlast_CBE 91.4850%-100 - C1 -1ZMD - DLDH_HUMAN -
117 HHSearch 90.8950%-105 - C1 -2YQU 13.1 ?
60 PsiBlast_CBE 90.8350%-106 - C1 -2EQ7 13.3 ?
10 PsiBlast_PDB 90.5150%-106 - C1 -2EQ7 13.3 ?
13 PsiBlast_PDB 89.0047%-101 - C1 -1LPF 12.1 DLDH_PSEFL
109 HHSearch 88.7147% -98 - C1 -2EQ6 13.4 ?
12 PsiBlast_PDB 87.9948% -99 - C1 -2QAE 12.0 DLDH_TRYCR
63 PsiBlast_CBE 87.9345%-105 - C1 -3LAD 12.6 DLDH_AZOVI
61 PsiBlast_CBE 87.9348% -98 - C1 -2QAE 12.1 DLDH_TRYCR
62 PsiBlast_CBE 87.8847%-100 - C1 -1LPF 12.5 DLDH_PSEFL
14 PsiBlast_PDB 87.1645%-105 - C1 -3LAD 12.3 DLDH_AZOVI
15 PsiBlast_PDB 86.9146% -95 - C1 -2EQ6 13.4 ?
74 PsiBlast_CBE 86.8646% -96 - C1 -2EQ6 13.4 ?
110 HHSearch 86.5646%-101 - C1 -3LAD 12.6 DLDH_AZOVI
75 PsiBlast_CBE 86.0042%-100 - C1 -1EBD 11.9 DLDH1_GEOSE
107 HHSearch 84.1539% -94 - C1 -1OJT 11.3 ?
19 PsiBlast_PDB 83.8237%-104 - C1 -4JDR 13.0 DLDH_ECOLI
81 PsiBlast_CBE 83.6237%-104 - C1 -4JDR 12.9 DLDH_ECOLI
118 HHSearch 83.3842%-100 - C1 -1EBD 12.6 DLDH1_GEOSE
18 PsiBlast_PDB 83.1742%-100 - C1 -1EBD 12.3 DLDH1_GEOSE
89 PsiBlast_CBE 82.3739% -93 - C1 -1OJT 11.1 ?
102 HHSearch 82.3441%-100 - C1 -1LVL 11.7 DLDH1_PSEPU
90 PsiBlast_CBE 81.4139% -92 - C1 -1BHY 11.4 ?
82 PsiBlast_CBE 79.4640% -96 - C1 -1LVL 11.7 DLDH1_PSEPU
114 HHSearch 77.1235% -95 - C1 -2A8X 11.5 DLDH_MYCTU
87 PsiBlast_CBE 76.3435% -90 - C1 -3II4 12.6 DLDH_MYCTU
88 PsiBlast_CBE 74.6935% -92 - C1 -3II4 11.5 DLDH_MYCTU
91 PsiBlast_CBE 74.0731% -96 - C1 -4YWO 9.3 ?