@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4832: (2016-03-01 )
MNEQIGNGVALVTGASSGIGATYAEHLARRGHDLLLVARDRQRLEALADRLRQAHGVRVEILRADLSERDDRLRVERRLRDDASIALLVNNAGVAMNGPLADADMDRAERMIALNVVALTRLAAGAAEGFRRRGGGAIVNLGSVVALAPELFNAVYSATKAYVLSLSQSLQHELAGSGVYVQAVLPGVTRTEIWERSGTGIAGIPAEMVMEVEDLVEAALVGFDRREAVTIPSLPDAADWQALMTARARLAPNLSRQRPAERYLG

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_D_18(3VDQ)
?
[Raw transfer]




NAD_C_15(3VDQ)
?
[Raw transfer]




NAD_A_7(3VDR)
?
[Raw transfer]




NAD_A_2(3V1U)
?
[Raw transfer]




NAD_B_13(3VDR)
?
[Raw transfer]




NAD_D_22(3VDR)
?
[Raw transfer]




EDO_B_22(3RRO)
FABG_VIBCH
[Raw transfer]




EDO_A_10(3RRO)
FABG_VIBCH
[Raw transfer]




GOL_A_3(3GED)
?
[Raw transfer]




EDO_A_11(3RRO)
FABG_VIBCH
[Raw transfer]




27 PsiBlast_CBE 96.9758%-118 - C2 -4BMV - ? -
26 PsiBlast_CBE 96.7458%-119 - C2 -4BMV - ? -
29 PsiBlast_CBE 96.5958%-118 - C2 -4BMV - ? -
28 PsiBlast_CBE 96.5758%-118 - C2 -4BMV - ? -
25 PsiBlast_CBE 96.5558%-118 - C2 -4BMV - ? -
22 PsiBlast_CBE 96.5058%-118 - C2 -4BMV - ? -
21 PsiBlast_CBE 96.4058%-118 - C2 -4BMV - ? -
24 PsiBlast_CBE 96.3458%-117 - C2 -4BMV - ? -
1 PsiBlast_PDB 96.1158%-118 - C2 -4BMV - ? -
23 PsiBlast_CBE 96.0158%-117 - C2 -4BMV - ? -
116 HHSearch 66.9732% -97 - C2 -3AI3 - ? -
37 PsiBlast_CBE 62.8334% -97 - C2 -3AI3 - ? -
3 PsiBlast_PDB 62.5934%-100 - C2 -3AI2 - ? -
38 PsiBlast_CBE 62.4834% -95 - C2 -3AI3 - ? -
35 PsiBlast_CBE 62.4634% -97 - C2 -3AI2 - ? -
30 PsiBlast_CBE 62.0134% -98 - C2 -3AI2 - ? -
39 PsiBlast_CBE 61.7934% -97 - C2 -3AI3 - ? -
31 PsiBlast_CBE 61.7834% -99 - C2 -3AI2 - ? -
2 PsiBlast_PDB 61.4834%-101 - C2 -3AI1 - ? -
4 PsiBlast_PDB 61.4034% -96 - C2 -3AI3 - ? -
83 PsiBlast_CBE 53.5931%-102 - C2 -3RRO 2.6 FABG_VIBCH
84 PsiBlast_CBE 52.5131%-101 - C2 -3RRO 3.0 FABG_VIBCH
44 PsiBlast_CBE 49.1531% -85 - C2 -3VDQ 7.6 ?
43 PsiBlast_CBE 46.8431% -81 - C2 -3VDQ 7.2 ?
77 PsiBlast_CBE 45.9832% -90 - C2 -3V1U 8.3 ?
7 PsiBlast_PDB 45.5431% -83 - C2 -3VDR 3.9 ?
42 PsiBlast_CBE 44.3231% -79 - C2 -3VDR 7.2 ?
40 PsiBlast_CBE 43.2131% -81 - C2 -3VDR 6.4 ?