@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4873: (2016-03-02 )
MNPSTAARALGIDFGTSNSTVGWWRPEVEPLIELEDGKITLPSVVFFNVEERRPVYGRQALGEYLEGYEGRLMRSLKSLLGSKLLKSETTVLGSALPFKDLLGLFIGQLKARGEAAAGQAFDAVVLGRPVFFVDDDPEADREAQDTLVQVANKLGFKEVSFQYEPIAAAFDYERCIQREELVLIVDIGGGTSDFSLVRLAPERRNLAERQDDILATGGVHIGGTDFDKQLSLEGVMPLFGYGSRMKSDAFMPTSYHLNLATWHTINAVYAQKSQLALKNMRYDIVDSTGIDRLFRLIEERAGHWLAMQVEDSKIRLTETERLHLSLERIEAGLGVELTRGLFENAVDGLLERVRNSVAQLLASAGVDPDRVDTVFFTGGSSGIPALRRSVSAMLPNARHVEGNLFGSIGSGLAIEAKKRYG

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_3(3KVG)
?
[Raw transfer]



ADP_A_2(3QFU)
GRP78_YEAST
[Raw transfer]



ADP_A_3(3I33)
HSP72_HUMAN
[Raw transfer]
13 PsiBlast_PDB 91.9322% -79 - C1 -3LDO - GRP78_HUMAN -
28 HHSearch 91.6922% -72 - C1 -3QFU 6.4 GRP78_YEAST
29 HHSearch 91.3423% -75 - C1 -3I33 6.0 HSP72_HUMAN
11 PsiBlast_PDB 91.3122% -80 - C1 -3LDL - GRP78_HUMAN -
14 PsiBlast_PDB 91.0422% -80 - C1 -3LDP - GRP78_HUMAN -
26 HHSearch 90.9022% -78 - C1 -3D2F - ? -
12 PsiBlast_PDB 90.2422% -80 - C1 -3LDN - GRP78_HUMAN -
18 PsiBlast_PDB 90.0722% -77 - C1 -3IUC - GRP78_HUMAN -
17 PsiBlast_PDB 89.6821% -75 - C1 -3QFU - GRP78_YEAST -
16 PsiBlast_PDB 89.4621% -76 - C1 -3QML - GRP78_YEAST -
27 HHSearch 89.0427% -72 - C1 -2V7Y - DNAK_GEOKA -
8 PsiBlast_PDB 88.6820% -79 - C1 -4JN4 - DNAK_ECOLI -
9 PsiBlast_PDB 87.6720% -77 - C1 -4JNE - DNAK_ECOLI -
4 PsiBlast_PDB 87.2724% -81 - C1 -3L4I - ? -
7 PsiBlast_PDB 87.2121% -83 - C1 -2KHO - DNAK_ECOLI -
3 PsiBlast_PDB 86.5124% -79 - C1 -3KVG 7.0 ?
15 PsiBlast_PDB 86.2821% -73 - C1 -3QFP - GRP78_YEAST -
5 PsiBlast_PDB 86.2424% -79 - C1 -3L6Q - ? -
1 PsiBlast_PDB 85.7025% -75 * C1 *2V7Y - DNAK_GEOKA -
20 PsiBlast_PDB 85.1922% -71 - C1 -3I33 - HSP72_HUMAN -