@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4909: (2016-03-02 )
MSAALLEFREVDVFYGPIQALKKVSLQVNEGETVSLIGANGAGKSTLLMSIFGQPRAAAGQILYRGQDIRQKSAHYVASNGIAQSPEGRRVFPDMSVEENLLMGTIPIGMDHAEEDMQRMFELFPRLKERRNQRAMTMSGGEQQMLAIARALMSRPKLLLLDEPSLGLAPIVVKQIFQTLRELARSGMTIFLVEQNANHALKLSDRAYVMVTGEIRMSGSGEELLGNQEVRNAYLGGH

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_2(1JI0)
?
[Raw transfer]




ATP_A_2(1JI0)
?
[Raw transfer]




ANP_J_5(3C41)
?
[Raw transfer]




ADP_A_4(1G6H)
LIVG_METJA
[Raw transfer]




ADP_B_10(1G9X)
LIVG_METJA
[Raw transfer]




ADP_A_8(1G9X)
LIVG_METJA
[Raw transfer]




ADP_C_12(1G9X)
LIVG_METJA
[Raw transfer]




AT4_A_5(2OLK)
?
[Raw transfer]




58 HHSearch 95.4453%-107 - C1 -1JI0 5.2 ?
1 PsiBlast_PDB 94.4451%-105 - C1 -1JI0 5.2 ?
24 PsiBlast_CBE 73.5435% -96 - C1 -4QC2 - ? -
74 Fugue 73.3427% -86 - C1 -1Z47 - ? -
23 PsiBlast_CBE 73.3433% -97 - C1 -4WBS - ? -
5 PsiBlast_PDB 73.2433% -95 - C1 -4WBS - ? -
2 PsiBlast_PDB 72.7832%-101 - C1 -1G6H 6.2 LIVG_METJA
6 PsiBlast_PDB 72.3935% -92 - C1 -4QC2 - ? -
26 PsiBlast_CBE 71.2834% -91 - C1 -4P33 - LPTB_ECOLI -
7 PsiBlast_PDB 71.0835% -89 - C1 -4P32 - LPTB_ECOLI -
25 PsiBlast_CBE 71.0135% -93 - C1 -4P32 - LPTB_ECOLI -
22 PsiBlast_CBE 70.8332% -99 - C1 -1G9X 6.0 LIVG_METJA
3 PsiBlast_PDB 70.8132% -92 - C1 -1GAJ - LIVG_METJA -
8 PsiBlast_PDB 70.6634% -90 - C1 -4P33 - LPTB_ECOLI -
68 HHSearch 70.4733% -97 - C1 -1G6H - LIVG_METJA -
4 PsiBlast_PDB 70.3632% -93 - C1 -1G9X 5.2 LIVG_METJA
70 Fugue 68.2433%-109 - C1 -1G6H - LIVG_METJA -
49 HHSearch 68.0427% -84 - C1 -1Z47 - ? -
21 PsiBlast_CBE 67.6632% -85 - C1 -1G9X 5.1 LIVG_METJA
64 HHSearch 65.4627% -93 - C1 -2OLJ - ? -