@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4913: (2016-03-02 )
MSKKLFRKGILALAVSSVMGLSTHALADVVIGVAGPHTGANASFGEQYWRGASQAAEDINAAGGINGEKIKLVKADDACEPKQAVAVANRLVDQDKAIAVVGHFCSSSTIPASEVYDEAGIIAITPGSTNPQVTERGLSGMFRMCGRDDQQGVVAGDYIVNVLKAKKVAVIHDKDTYGQGLADATRAQLNKLGVKEVLYEGLTRGEKDFNALVTKIRASGAEVVYFGGLHPEAGPLVRQMREQGLTARFMSDDGVVTDELATTAGGPQYVKGVLMTFGADPRLIPDGKAVVEKFRAGGFEPEGYTLYSYASIQSLAAAFNGAGANDPAKAAEWLKSHPVQTVMGKKEWDKKGDLKVSDYVVYEWDDKGKYHQLP

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ALA_A_2(3IPA)
?
[Raw transfer]



LEU_A_2(3IPC)
?
[Raw transfer]



VAL_A_2(3IP7)
?
[Raw transfer]



ALA_A_2(3IP5)
?
[Raw transfer]



LEU_A_2(3IPC)
?
[Raw transfer]



LEU_A_3(1Z16)
LIVJ_ECOLI
[Raw transfer]



PRO_A_2(3IP6)
?
[Raw transfer]



VAL_A_5(1Z18)
LIVJ_ECOLI
[Raw transfer]



PHE_C_4(1USI)
LIVK_ECOLI
[Raw transfer]



PHE_A_3(1USI)
LIVK_ECOLI
[Raw transfer]



ILE_B_2(1Z17)
LIVJ_ECOLI
[Raw transfer]



ABU_A_2(3IP9)
?
[Raw transfer]
40 HHSearch 95.2855% -72 * C1 *3IPC 2.8 ?
6 PsiBlast_PDB 94.1555% -74 - C1 -3IPC 2.8 ?
4 PsiBlast_PDB 93.7655% -76 - C1 -3IP9 3.7 ?
2 PsiBlast_PDB 93.7255% -75 - C1 -3IP6 3.6 ?
1 PsiBlast_PDB 93.5755% -75 - C1 -3IP5 4.8 ?
5 PsiBlast_PDB 93.4955% -75 - C1 -3IPA 3.3 ?
3 PsiBlast_PDB 93.3955% -76 - C1 -3IP7 3.7 ?
11 PsiBlast_PDB 89.5142% -83 - C1 -2LIV - LIVJ_ECOLI -
26 PsiBlast_CBE 88.7942% -73 - C1 -4N0Q - LIVB3_BRUME -
7 PsiBlast_PDB 88.6842% -80 - C1 -1Z15 - LIVJ_ECOLI -
8 PsiBlast_PDB 88.2042% -72 - C1 -1Z16 2.9 LIVJ_ECOLI
9 PsiBlast_PDB 88.1442% -73 - C1 -1Z17 3.3 LIVJ_ECOLI
15 PsiBlast_PDB 88.1342% -71 - C1 -4N0Q - LIVB3_BRUME -
27 PsiBlast_CBE 88.0642% -70 - C1 -4N0Q - LIVB3_BRUME -
21 PsiBlast_CBE 87.9041% -75 - C1 -1USK - LIVK_ECOLI -
14 PsiBlast_PDB 87.6841% -74 - C1 -1USI 3.8 LIVK_ECOLI
25 PsiBlast_CBE 87.5842% -74 - C1 -4N0Q - LIVB3_BRUME -
22 PsiBlast_CBE 87.5841% -74 - C1 -1USK - LIVK_ECOLI -
13 PsiBlast_PDB 87.5841% -73 - C1 -1USK - LIVK_ECOLI -
24 PsiBlast_CBE 87.3341% -74 - C1 -1USI 4.3 LIVK_ECOLI
10 PsiBlast_PDB 86.5642% -69 - C1 -1Z18 2.9 LIVJ_ECOLI