@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4930: (2016-03-02 )
MRPLVATVDLSAIRHNYALAKRCAPQRQAFAVVKANAYGHGAREVVTALHDDADGFAVACLEEAAEVRALHASARILLLEGCFEASEYALAGQLRLDLVIQGAEQGEAFLAAGLDIPLNVWLKLDSGMHRLGFDPAALRAWHARLRSHPGVRELNLISHFACADERNHPLTEQQLESFLGLLDLDFDQRSLANSAAVLTIPAAHMDWLRPGIMLYGSTPLADLSAAELGLKPAMSLGAQLISLREVAVGESVGYGATWIAERPARIGTVSCGYADGYPRTAPAGTPVLVGGRRAILAGRVSMDMLAVDLSDLPEARVGDPVELWGAGLSVDEVARACGTLGYELLSKVTARVPRRYSH

Atome Classification :

(37 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BME_A_5(3OO2)
ALR1_STAAC
[Raw transfer]




IN5_B_4(1BD0)
ALR_GEOSE
[Raw transfer]




DCS_C_6(3E6E)
?
[Raw transfer]




DCS_A_4(3E6E)
?
[Raw transfer]




DCS_B_5(3E6E)
?
[Raw transfer]




IN5_A_3(1BD0)
ALR_GEOSE
[Raw transfer]




IN5_A_3(1BD0)
ALR_GEOSE
[Raw transfer]




DCS_A_3(4LUT)
?
[Raw transfer]




IN5_A_3(1BD0)
ALR_GEOSE
[Raw transfer]




IN5_A_3(1BD0)
ALR_GEOSE
[Raw transfer]




PLP_B_11(4A3Q)
ALR1_STAAM
[Raw transfer]




PLP_C_10(3E5P)
?
[Raw transfer]




PLP_A_3(4A3Q)
ALR1_STAAM
[Raw transfer]




PLP_A_4(3E5P)
?
[Raw transfer]




PLP_A_3(1XFC)
ALR_MYCTU
[Raw transfer]




PLP_A_5(1SFT)
ALR_GEOSE
[Raw transfer]




PLP_B_7(3E5P)
?
[Raw transfer]




PLP_A_4(3E5P)
?
[Raw transfer]




PLP_B_6(1SFT)
ALR_GEOSE
[Raw transfer]




PMH_A_3(1XQK)
ALR_GEOSE
[Raw transfer]




PLP_A_3(1XFC)
ALR_MYCTU
[Raw transfer]




GOL_B_18(4DYJ)
ALR_PSEPU
[Raw transfer]




PLP_B_4(1XFC)
ALR_MYCTU
[Raw transfer]




EPC_D_4(1FTX)
ALR_GEOSE
[Raw transfer]




PP3_D_4(1L6F)
ALR_GEOSE
[Raw transfer]




PMH_B_4(1XQK)
ALR_GEOSE
[Raw transfer]




PP3_C_3(1L6F)
ALR_GEOSE
[Raw transfer]




EPC_C_3(1FTX)
ALR_GEOSE
[Raw transfer]




PMP_A_3(1XQL)
ALR_GEOSE
[Raw transfer]




PMP_B_7(1XQL)
ALR_GEOSE
[Raw transfer]




DCS_C_3(1NIU)
ALR_GEOSE
[Raw transfer]




PLP_B_5(2SFP)
ALR_GEOSE
[Raw transfer]




PLP_A_3(2SFP)
ALR_GEOSE
[Raw transfer]




6 PsiBlast_PDB 92.1637%-107 - C4 -1SFT 4.2 ALR_GEOSE
27 PsiBlast_CBE 91.1037%-106 - C4 -1SFT 5.6 ALR_GEOSE
52 HHSearch 90.8737%-102 - C4 -1BD0 7.5 ALR_GEOSE
7 PsiBlast_PDB 90.8237%-105 - C4 -1BD0 7.4 ALR_GEOSE
28 PsiBlast_CBE 89.9837%-105 - C4 -1BD0 7.8 ALR_GEOSE
24 PsiBlast_CBE 89.3135%-108 - C4 -3E5P 3.1 ?
25 PsiBlast_CBE 88.9435%-108 - C4 -3E5P 3.7 ?
22 PsiBlast_CBE 88.9435%-111 - C4 -3E6E 5.6 ?
23 PsiBlast_CBE 88.9035%-108 - C4 -3E6E 5.3 ?
8 PsiBlast_PDB 88.7633%-111 - C4 -3OO2 - ALR1_STAAC -
29 PsiBlast_CBE 88.7433%-111 - C4 -3OO2 Error ALR1_STAAC
4 PsiBlast_PDB 88.3335%-107 - C4 -3E6E 6.0 ?
50 HHSearch 88.3036%-101 - C4 -3E5P 4.1 ?
3 PsiBlast_PDB 87.5035%-107 - C4 -3E5P 4.1 ?
14 PsiBlast_PDB 87.1531%-117 - C4 -3HA1 - ? -
21 PsiBlast_CBE 86.7933%-107 - C4 -2DY3 - ALR_CORGL -
2 PsiBlast_PDB 85.8132%-104 - C4 -4ECL - ? -
13 PsiBlast_PDB 85.7235%-117 - C4 -4ILS - ALR_GEOSE -
26 PsiBlast_CBE 85.5033%-116 - C4 -4A3Q 3.7 ALR1_STAAM
5 PsiBlast_PDB 82.8633%-116 - C4 -4A3Q 3.7 ALR1_STAAM
9 PsiBlast_PDB 81.3430%-104 - C4 -4LUT 5.1 ?
56 HHSearch 81.0532%-102 - C4 -1XFC 3.6 ALR_MYCTU
10 PsiBlast_PDB 81.0133% -93 - C4 -1XFC 3.7 ALR_MYCTU
46 PsiBlast_CBE 80.4833% -91 - C4 -1XFC 3.4 ALR_MYCTU
73 Fugue 64.5735% -92 * C4 *1BD0 6.9 ALR_GEOSE
31 PsiBlast_CBE 64.1936% -57 - C4 -1FTX 2.6 ALR_GEOSE
37 PsiBlast_CBE 63.7936% -57 - C4 -1NIU 1.3 ALR_GEOSE
45 PsiBlast_CBE 62.9136% -55 - C4 -1XQK 2.6 ALR_GEOSE
30 PsiBlast_CBE 62.6336% -54 - C4 -1FTX 3.0 ALR_GEOSE
35 PsiBlast_CBE 62.3936% -54 - C4 -2SFP 2.1 ALR_GEOSE
43 PsiBlast_CBE 62.3836% -55 - C4 -1XQL 2.5 ALR_GEOSE
42 PsiBlast_CBE 62.1536% -56 - C4 -1XQL 2.7 ALR_GEOSE
34 PsiBlast_CBE 62.0336% -54 - C4 -2SFP 2.7 ALR_GEOSE
44 PsiBlast_CBE 61.7336% -56 - C4 -1XQK 2.3 ALR_GEOSE
75 Fugue 61.3535% -89 - C4 -1BD0 6.5 ALR_GEOSE
40 PsiBlast_CBE 61.3536% -54 - C4 -1L6F 2.8 ALR_GEOSE
41 PsiBlast_CBE 61.1536% -54 - C4 -1L6F 3.0 ALR_GEOSE