@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4967: (2016-03-03 )
MATYNADAIEVLSGLDPVRKRPGMYTDTTRPNHLAQEVIDNSVDEALAGHAKSVQVILHQDNSLEVIDDGRGMPVDIHPEEGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVVNALSTRVEVRVKRDANEYRMTFADGFKDSDLEVIGTVGKRNTGTSVHFWPDPKYFDSAKFSVSRLKHVLKAKAVLCPGLSVVFEDKNTGERVEWHFEDGLRSYLTDAVAELPRLPDEPFCGNLEGSKEAVSWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGVVKDAFSLWLNEHAEIGLQLAELAISNAGRRLKAGKKVERKKITQGPALPGKLADCAGQEPMRAELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDIAVAIGVDPGASDLAQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVEAGHVYVAMPPLYRIDLGKDIYYALDEAERDGILERLAAEKKRGKPQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTLEDATGTLEIMDMLLAKKRAGDRKSWLESKGNLAEVLV

Atome Classification :

(65 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_7(1S16)
PARE_ECOLI
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




DOO_B_12(4KQV)
?
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




920_A_2(4KSG)
?
[Raw transfer]




DOO_A_5(4KQV)
?
[Raw transfer]




ANP_B_7(1EI1)
GYRB_ECOLI
[Raw transfer]




ADP_A_2(4PRV)
GYRB_ECOLI
[Raw transfer]




DOO_A_2(4K4O)
?
[Raw transfer]




ANP_A_2(4WUB)
GYRB_ECOLI
[Raw transfer]




ANP_A_2(4WUD)
GYRB_ECOLI
[Raw transfer]




ANP_A_2(4WUC)
GYRB_ECOLI
[Raw transfer]




ANP_A_2(4XTJ)
GYRB_ECOLI
[Raw transfer]




ADP_A_2(4PU9)
GYRB_ECOLI
[Raw transfer]




ANP_B_8(1S16)
PARE_ECOLI
[Raw transfer]




DOO_A_5(4KFG)
GYRB_ECOLI
[Raw transfer]




DOO_B_7(4KFG)
GYRB_ECOLI
[Raw transfer]




1EU_B_4(3FV5)
PARE_ECOLI
[Raw transfer]




1A0_A_2(4HXW)
?
[Raw transfer]




CJC_A_3(4HYM)
?
[Raw transfer]




19X_B_4(4HY1)
?
[Raw transfer]




1EU_A_3(3FV5)
PARE_ECOLI
[Raw transfer]




1EU_A_3(3FV5)
PARE_ECOLI
[Raw transfer]




B46_A_2(3G7E)
GYRB_ECOLI
[Raw transfer]




28G_A_2(4MBC)
?
[Raw transfer]




28F_A_3(4MB9)
?
[Raw transfer]




2B7_A_2(4MOT)
?
[Raw transfer]




1YP_A_2(4LPB)
?
[Raw transfer]




RLI_A_3(4DUH)
GYRB_ECOLI
[Raw transfer]




RLI_B_4(4DUH)
GYRB_ECOLI
[Raw transfer]




NOV_D_4(1S14)
PARE_ECOLI
[Raw transfer]




NOV_C_3(1S14)
PARE_ECOLI
[Raw transfer]




1AV_B_5(4HZ0)
PARE_ECOLI
[Raw transfer]




NOV_A_3(1KIJ)
?
[Raw transfer]




1A1_D_11(4HYP)
GYRB_ECOLI
[Raw transfer]




NOV_A_3(1KIJ)
?
[Raw transfer]




1A1_C_9(4HYP)
GYRB_ECOLI
[Raw transfer]




NOV_A_3(1KIJ)
?
[Raw transfer]




NOV_A_3(1KIJ)
?
[Raw transfer]




1AV_A_3(4HZ0)
PARE_ECOLI
[Raw transfer]




NOV_D_8(4URO)
GYRB_STAAU
[Raw transfer]




RWX_B_8(4BAE)
GYRB_MYCSM
[Raw transfer]




0RA_A_2(4EM7)
?
[Raw transfer]




1A1_A_5(4HYP)
GYRB_ECOLI
[Raw transfer]




1A1_B_7(4HYP)
GYRB_ECOLI
[Raw transfer]




NOV_C_6(4URN)
?
[Raw transfer]




NOV_B_2(1AJ6)
GYRB_ECOLI
[Raw transfer]




NOV_A_4(4URN)
?
[Raw transfer]




TTJ_A_2(5BOD)
?
[Raw transfer]




19Y_A_3(4HXZ)
?
[Raw transfer]




NOV_B_4(1KIJ)
?
[Raw transfer]




NOV_B_5(4URN)
?
[Raw transfer]




4S4_A_2(4ZVI)
?
[Raw transfer]




3 PsiBlast_PDB 83.9941% -93 - C3 -4JUO - PARE_STRPN -
4 PsiBlast_PDB 83.4741% -88 - C3 -4I3H - ? -
21 PsiBlast_CBE 83.4074% -84 - C2 -1S16 10.1 PARE_ECOLI
116 HHSearch 83.1374% -84 - C2 -1S16 9.8 PARE_ECOLI
1 PsiBlast_PDB 83.1374% -84 - C2 -1S16 - PARE_ECOLI -
119 HHSearch 81.2668% -93 - C2 -3LNU - ? -
2 PsiBlast_PDB 81.0268% -94 - C2 -3LNU - ? -
5 PsiBlast_PDB 75.2451% -93 - C2 -4HXZ 5.0 ?
7 PsiBlast_PDB 74.5251% -91 - C2 -4KQV 6.7 ?
6 PsiBlast_PDB 74.2151% -89 - C2 -4HYM 6.0 ?
46 PsiBlast_CBE 67.6035% -79 - C2 -3ZKB - GYRB_MYCTU -
47 PsiBlast_CBE 66.6735% -74 - C2 -3ZKB - GYRB_MYCTU -
28 PsiBlast_CBE 66.6335% -87 - C2 -3ZM7 - GYRB_MYCTU -
34 PsiBlast_CBE 66.5235% -80 - C2 -3ZKD - GYRB_MYCTU -
135 Fugue 66.2538% -80 - C2 -1KIJ 3.5 ?
136 Fugue 66.1236% -73 - C2 -1EI1 8.2 GYRB_ECOLI
30 PsiBlast_CBE 66.1235% -81 - C2 -3ZKD - GYRB_MYCTU -
48 PsiBlast_CBE 65.9435% -75 - C2 -3ZKB - GYRB_MYCTU -
29 PsiBlast_CBE 65.9435% -76 - C2 -3ZKD - GYRB_MYCTU -
19 PsiBlast_PDB 65.5838% -81 - C2 -1KIJ 3.5 ?
115 HHSearch 65.1939% -77 - C2 -1KIJ 3.5 ?
49 PsiBlast_CBE 64.1138% -80 - C2 -1KIJ 6.0 ?
14 PsiBlast_PDB 62.7837% -68 - C2 -4WUB 10.0 GYRB_ECOLI
51 PsiBlast_CBE 62.5737% -79 - C2 -4ZVI 5.7 ?
15 PsiBlast_PDB 62.2937% -68 - C2 -4WUC 10.1 GYRB_ECOLI
13 PsiBlast_PDB 61.9837% -67 - C2 -4XTJ 10.0 GYRB_ECOLI
20 PsiBlast_PDB 61.5137% -68 - C2 -1EI1 8.2 GYRB_ECOLI
16 PsiBlast_PDB 61.1837% -68 - C2 -4WUD 10.1 GYRB_ECOLI
50 PsiBlast_CBE 61.1437% -66 - C2 -1EI1 8.3 GYRB_ECOLI
17 PsiBlast_PDB 59.6037% -64 - C2 -4PRV 7.5 GYRB_ECOLI
18 PsiBlast_PDB 59.1137% -65 - C2 -4PU9 7.5 GYRB_ECOLI
23 PsiBlast_CBE 55.8151% -72 - C2 -4HY1 7.2 ?
24 PsiBlast_CBE 54.2375% -59 - C2 -4HZ0 5.5 PARE_ECOLI
8 PsiBlast_PDB 54.0575% -57 - C2 -4HZ0 5.1 PARE_ECOLI
9 PsiBlast_PDB 53.8176% -68 - C2 -3FV5 5.6 PARE_ECOLI
124 HHSearch 53.7376% -68 - C2 -3FV5 5.6 PARE_ECOLI
25 PsiBlast_CBE 52.0976% -62 - C2 -3FV5 5.7 PARE_ECOLI
84 PsiBlast_CBE 50.3047% -67 - C2 -4MOT 5.9 ?
26 PsiBlast_CBE 50.0066% -51 - C2 -1S14 5.9 PARE_ECOLI
85 PsiBlast_CBE 49.9547% -68 - C2 -4MBC 4.9 ?
88 PsiBlast_CBE 49.6747% -65 - C2 -4EM7 5.3 ?
83 PsiBlast_CBE 49.5847% -65 - C2 -5BOD 4.8 ?
10 PsiBlast_PDB 48.8066% -54 - C2 -1S14 5.8 PARE_ECOLI
86 PsiBlast_CBE 48.6147% -64 - C2 -4MB9 4.4 ?
87 PsiBlast_CBE 48.5447% -67 - C2 -4LPB 6.4 ?
96 PsiBlast_CBE 48.4544% -67 - C2 -4BAE 7.0 GYRB_MYCSM
81 PsiBlast_CBE 47.7446% -52 - C2 -4DUH 6.5 GYRB_ECOLI
22 PsiBlast_CBE 47.7251% -59 - C2 -4KQV 6.8 ?
105 PsiBlast_CBE 46.8148% -55 - C2 -4K4O 6.4 ?
106 PsiBlast_CBE 46.8048% -61 * C2 *4HXW 6.5 ?
82 PsiBlast_CBE 46.5446% -59 - C2 -1AJ6 5.4 GYRB_ECOLI
80 PsiBlast_CBE 46.4946% -56 - C2 -4DUH 6.9 GYRB_ECOLI
94 PsiBlast_CBE 46.4347% -61 - C2 -4HYP 7.2 GYRB_ECOLI
90 PsiBlast_CBE 46.0647% -57 - C2 -4KFG 7.0 GYRB_ECOLI
92 PsiBlast_CBE 45.8947% -62 - C2 -4HYP 6.9 GYRB_ECOLI
93 PsiBlast_CBE 45.7347% -63 - C2 -4HYP 6.7 GYRB_ECOLI
95 PsiBlast_CBE 45.6247% -48 - C2 -3G7E 6.9 GYRB_ECOLI
91 PsiBlast_CBE 45.3447% -60 - C2 -4HYP 7.5 GYRB_ECOLI
104 PsiBlast_CBE 45.3348% -56 - C2 -4KSG 6.2 ?
139 Fugue 45.0247% -64 - C2 -1KIJ 5.6 ?
89 PsiBlast_CBE 44.8047% -56 - C2 -4KFG 7.3 GYRB_ECOLI
110 PsiBlast_CBE 43.5243% -65 - C2 -4URO 5.8 GYRB_STAAU
109 PsiBlast_CBE 43.4545% -55 - C2 -4URN 4.9 ?
108 PsiBlast_CBE 42.8545% -56 - C2 -4URN 4.3 ?
107 PsiBlast_CBE 42.3645% -53 - C2 -4URN 4.6 ?