@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4994: (2016-03-03 )
MYLETPKKFRSLANQAHQVAENYFRPISRKYDKAEHAYPKELDLLAALLDGMNSGSPEAVGATSASKRAGKQVEEGIKNGGNLSALLGVMELCWGDVGLLLAMPRQGLGNAAIAAVANEEQLQRFGGTWAAMAITEPGCGSDSAAIRTTATQDGDHYVLNGEKIFVTSGERADAVVVWATLNRNLGRAAIKSFVVEKGTPGMTVTRLEKKLGIKASDTASISFNDCRVPAANLLGNAEVDVQKGFAGVMETFDNTRPLVAGMAVGVAKAALDRTRELLKKAGCKFDYRKPLLTVSHAEATLYRLEAEWEAARLLTLKAAWMADNKLPNSKEASIAKAKAGRVANEITLKCVELAGALGYAEDELLEKWARDSKILDIFEGTQQIQLLIVARRLLGKSSSQLK

Atome Classification :

(38 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_9(1BUC)
ACDS_MEGEL
[Raw transfer]




FAD_A_9(1BUC)
ACDS_MEGEL
[Raw transfer]




FAD_A_9(1BUC)
ACDS_MEGEL
[Raw transfer]




FAD_B_8(4L1F)
?
[Raw transfer]




FAD_A_3(4L1F)
?
[Raw transfer]




FDA_A_3(4N5F)
?
[Raw transfer]




FAD_B_5(1UKW)
?
[Raw transfer]




FAD_A_3(2D29)
?
[Raw transfer]




FAD_B_11(1BUC)
ACDS_MEGEL
[Raw transfer]




FAD_A_5(3MDD)
ACADM_PIG
[Raw transfer]




FAO_A_4(3P4T)
?
[Raw transfer]




FAD_K_11(1JQI)
ACADS_RAT
[Raw transfer]




FAD_A_4(1UKW)
?
[Raw transfer]




FAD_B_4(2D29)
?
[Raw transfer]




FAD_A_3(3B96)
ACADV_HUMAN
[Raw transfer]




FAD_I_9(1JQI)
ACADS_RAT
[Raw transfer]




FAD_B_7(3MDD)
ACADM_PIG
[Raw transfer]




FAD_A_4(2UXW)
ACADV_HUMAN
[Raw transfer]




FDA_B_15(4N5F)
?
[Raw transfer]




CO8_B_7(3MDE)
ACADM_PIG
[Raw transfer]




CO8_A_5(3MDE)
ACADM_PIG
[Raw transfer]




UNL_A_9(3SF6)
?
[Raw transfer]




21 PsiBlast_CBE 91.7634% -75 - C2 -1UKW 8.2 ?
1 PsiBlast_PDB 90.1634% -74 - C2 -1UKW - ? -
29 PsiBlast_CBE 90.0834% -68 - C2 -1EGE - ACADM_HUMAN -
39 PsiBlast_CBE 89.2433% -66 - C2 -1EGC - ACADM_HUMAN -
4 PsiBlast_PDB 88.8834% -68 - C2 -1EGE - ACADM_HUMAN -
31 PsiBlast_CBE 88.6134% -66 - C2 -1EGE - ACADM_HUMAN -
36 PsiBlast_CBE 88.2833% -65 - C2 -1EGD - ACADM_HUMAN -
34 PsiBlast_CBE 88.1334% -63 - C2 -2A1T - ACADM_HUMAN -
103 HHSearch 88.1034% -63 - C2 -1UKW 8.9 ?
22 PsiBlast_CBE 87.3634% -64 - C2 -4P13 - ACADM_HUMAN -
28 PsiBlast_CBE 87.2934% -65 - C2 -1T9G - ACADM_HUMAN -
38 PsiBlast_CBE 87.2333% -66 - C2 -1EGC - ACADM_HUMAN -
37 PsiBlast_CBE 87.2233% -64 - C2 -1EGD - ACADM_HUMAN -
40 PsiBlast_CBE 87.1233% -64 - C2 -1EGC - ACADM_HUMAN -
2 PsiBlast_PDB 87.0834% -63 - C2 -4P13 - ACADM_HUMAN -
33 PsiBlast_CBE 86.7934% -65 - C2 -2A1T - ACADM_HUMAN -
26 PsiBlast_CBE 86.7434% -63 - C2 -1T9G - ACADM_HUMAN -
112 Fugue 86.5034% -70 - C2 -1BUC 8.0 ACDS_MEGEL
30 PsiBlast_CBE 86.4734% -64 - C2 -1EGE - ACADM_HUMAN -
24 PsiBlast_CBE 86.3934% -64 - C2 -4P13 - ACADM_HUMAN -
52 PsiBlast_CBE 85.5433% -63 - C2 -3MDE 7.9 ACADM_PIG
12 PsiBlast_PDB 84.7933% -63 - C2 -3MDD 7.2 ACADM_PIG
13 PsiBlast_PDB 84.1333% -64 - C2 -3MDE 5.7 ACADM_PIG
53 PsiBlast_CBE 82.9433% -60 - C2 -3MDD 7.7 ACADM_PIG
108 HHSearch 81.5833% -63 - C2 -1BUC 8.0 ACDS_MEGEL
41 PsiBlast_CBE 79.4132% -71 - C2 -4L1F 9.0 ?
9 PsiBlast_PDB 78.4432% -71 - C2 -4L1F 9.3 ?
54 PsiBlast_CBE 70.6435% -82 - C2 -1BUC 8.8 ACDS_MEGEL
14 PsiBlast_PDB 70.3135% -78 - C2 -1BUC 7.9 ACDS_MEGEL
105 HHSearch 70.2730% -55 - C2 -3P4T 7.4 ?
3 PsiBlast_PDB 69.0033% -49 - C2 -1JQI 8.5 ACADS_RAT
25 PsiBlast_CBE 68.7033% -49 - C2 -1JQI 9.1 ACADS_RAT
77 PsiBlast_CBE 55.9431% -58 - C2 -3B96 9.4 ACADV_HUMAN
17 PsiBlast_PDB 55.7935% -56 - C2 -4N5F 8.9 ?
78 PsiBlast_CBE 53.8932% -58 - C2 -2UXW 10.1 ACADV_HUMAN
61 PsiBlast_CBE 51.2335% -56 - C2 -4N5F 7.3 ?
80 PsiBlast_CBE 50.1936% -60 - C2 -2D29 7.9 ?
79 PsiBlast_CBE 49.1436% -63 - C2 -2D29 8.2 ?