@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4997: (2016-03-03 )
MSDSPQNPGPSSLKIYFRLLGYVKPYIGMFLLSIVGFLIFASTQPMLAGILKYFVDGLSNPDAALFPNVQWPWLRDLHLVYAVPLLIILIAAWQGLGSFLGNFFLAKVSLGLVHDLRVALFNKLLVLPNRYFDTHSSGHLISRITFNVTMVTGAATDAIKVVIREGLTVVFLFLYLLWMNWKLTLVMLAILPVIAVMVTTASRKFRKQSKKIQVAMGDVTHVASETIQGYRVVRSFGGEAYEEKRFLDASQSNTDKQLRMTKTGAVYTPMLQLVIYVAMAILMFLVLWLRGDASAGDLVAYITAAGLLPKPIRQLSEVSSTVQRGVAGAESIFEQLDEAAEEDQGTVEKERVSGRLEVRNLSFRYPGTDKQVLDDISFIAEPGQMIALVGRSGSGKSTLANLVPRFYQHNDGKILLDGVEVEDYRLRNLRRHIALVTQQVTLFNDSVANNIAYGDLAGAPREEIERAAKAANAKEFIDNLPQGFDTEVGENGVLLSGGQRQRLAIARALLKDAPLLILDEATSALDTESERHIQAALDEVMKGRTTLVIAHRLSTIEKADLILVMDQGQIVERGSHAELLAQNGHYARLHAMGLDEQAPAPVG

Atome Classification :

(67 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_B_7(2ONJ)
Y1866_STAAM
[Raw transfer]




ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ANP_A_8(2ONJ)
Y1866_STAAM
[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_A_2(4K8O)

[Raw transfer]




ATP_C_9(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ATP_D_6(2IXE)

[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ADP_A_2(3NHB)

[Raw transfer]




ADP_A_5(2HYD)
Y1866_STAAM
[Raw transfer]




ADP_B_2(2FFB)

[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]




ADP_A_3(3NHA)

[Raw transfer]




ACP_A_4(4AYT)
ABCBA_HUMAN
[Raw transfer]




ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




ATP_A_2(2IXG)

[Raw transfer]




ATP_D_5(3VX4)
?
[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




ADP_B_2(2FFA)

[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ADP_A_2(5DGX)
?
[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ADP_B_6(2HYD)
Y1866_STAAM
[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ACP_A_4(4AYX)
ABCBA_HUMAN
[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_A_2(3NH9)

[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_B_8(2IXF)
TAP1_RAT
[Raw transfer]




ADP_D_10(1MV5)

[Raw transfer]




ATP_D_15(2IXF)

[Raw transfer]




ATP_C_12(2IXF)
TAP1_RAT
[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




ADP_A_3(1JJ7)

[Raw transfer]




ATP_A_5(2IXF)
TAP1_RAT
[Raw transfer]




ATP_A_3(3VX4)
?
[Raw transfer]




ATP_A_3(3VX4)
?
[Raw transfer]




ADP_B_8(1MV5)
LMRA_LACLA
[Raw transfer]




ANP_A_2(4AYW)
ABCBA_HUMAN
[Raw transfer]




ADP_A_2(4U00)
?
[Raw transfer]




BME_A_2(3NH6)

[Raw transfer]




BME_A_2(3NH6)

[Raw transfer]




LMT_A_7(4MKI)
ECFA2_CALS4
[Raw transfer]




LMT_B_4(4MKI)
ECFA2_CALS4
[Raw transfer]




103 HHSearch 84.9141%-109 - C2 -3B60 - MSBA_SALTY -
4 PsiBlast_PDB 84.1340%-109 - C2 -3B60 - MSBA_SALTY -
23 PsiBlast_CBE 84.0740%-109 - C2 -3B60 - MSBA_SALTY -
124 Fugue 83.9640%-107 - C2 -3B60 - MSBA_SALTY -
21 PsiBlast_CBE 83.8140%-109 - C2 -3B60 - MSBA_SALTY -
22 PsiBlast_CBE 83.4640%-109 - C2 -3B60 - MSBA_SALTY -
9 PsiBlast_PDB 79.2134%-111 - C2 -3QF4 - Y288_THEMA -
7 PsiBlast_PDB 79.0836%-105 - C2 -2ONJ 6.0 Y1866_STAAM
31 PsiBlast_CBE 78.8836%-107 - C2 -2HYD 4.6 Y1866_STAAM
6 PsiBlast_PDB 78.7336%-106 - C2 -2HYD 4.7 Y1866_STAAM
30 PsiBlast_CBE 78.6136%-106 - C2 -2ONJ 6.2 Y1866_STAAM
10 PsiBlast_PDB 78.4034%-112 - C2 -4Q4A - Y288_THEMA -
11 PsiBlast_PDB 77.9734%-107 - C2 -4Q4H - Y288_THEMA -
12 PsiBlast_PDB 77.5534%-111 - C2 -4Q4J - Y288_THEMA -
106 HHSearch 77.0631%-105 - C2 -3WMG - ? -
105 HHSearch 75.8531%-108 - C2 -3ZDQ - ABCBA_HUMAN -
15 PsiBlast_PDB 75.3836%-105 - C2 -4AYX 5.6 ABCBA_HUMAN
34 PsiBlast_CBE 74.7235%-101 - C2 -4M1M - MDR1A_MOUSE -
18 PsiBlast_PDB 74.7135%-103 - C2 -4M2S - MDR1A_MOUSE -
35 PsiBlast_CBE 74.6935%-105 - C2 -4M1M - MDR1A_MOUSE -
14 PsiBlast_PDB 73.4236%-104 - C2 -4AYT 6.1 ABCBA_HUMAN
17 PsiBlast_PDB 70.2536%-108 - C2 -4AYW 5.7 ABCBA_HUMAN
53 PsiBlast_CBE 54.6149% -99 - C2 -3NH9 6.3
54 PsiBlast_CBE 53.6949% -96 - C2 -3NH6 3.0
44 PsiBlast_CBE 53.6452% -92 - C2 -5DGX 6.6 ?
52 PsiBlast_CBE 53.4949% -96 - C2 -3NHA 6.6
107 HHSearch 53.4844% -85 - C2 -3NH6 3.0
51 PsiBlast_CBE 52.8549% -98 - C2 -3NHB 6.6
113 HHSearch 52.4645% -95 - C2 -2FF7 6.4
85 PsiBlast_CBE 51.7743% -80 - C2 -2IXF 7.7 TAP1_RAT
89 PsiBlast_CBE 51.3542% -83 - C2 -2IXE 7.1
87 PsiBlast_CBE 51.0943% -79 - C2 -2IXF 7.3 TAP1_RAT
110 HHSearch 50.8542% -85 - C2 -2IXE 7.4 TAP1_RAT
86 PsiBlast_CBE 50.7943% -77 - C2 -2IXF 7.5 TAP1_RAT
88 PsiBlast_CBE 50.6143% -85 - C2 -1JJ7 5.9
84 PsiBlast_CBE 50.0543% -77 - C2 -2IXF 7.7
90 PsiBlast_CBE 49.7942% -80 - C2 -2IXE 7.5 TAP1_RAT
73 PsiBlast_CBE 49.5047% -95 - C2 -2FGJ 6.9
91 PsiBlast_CBE 49.4042% -83 - C2 -4K8O 6.8
92 PsiBlast_CBE 49.2442% -79 - C2 -2IXG 6.8
69 PsiBlast_CBE 48.7947% -90 - C2 -2FGK 7.4 HLYBP_ECOLX
79 PsiBlast_CBE 48.7847% -94 - C2 -1XEF 7.0 HLYBP_ECOLX
70 PsiBlast_CBE 48.6447% -88 - C2 -2FGK 7.6 HLYBP_ECOLX
82 PsiBlast_CBE 48.5942% -87 - C2 -3VX4 6.5 ?
68 PsiBlast_CBE 48.4047% -87 - C2 -2FGK 6.7 HLYBP_ECOLX
66 PsiBlast_CBE 48.3848% -90 - C2 -2PMK 6.9
81 PsiBlast_CBE 48.3747% -91 - C2 -1XEF 6.5 HLYBP_ECOLX
67 PsiBlast_CBE 48.3247% -91 - C2 -2FGK 7.2
78 PsiBlast_CBE 48.1447% -91 - C2 -1XEF 6.9
80 PsiBlast_CBE 48.0947% -94 - C2 -1XEF 7.0 HLYBP_ECOLX
76 PsiBlast_CBE 48.0447% -86 - C2 -2FGJ 6.9 HLYBP_ECOLX
64 PsiBlast_CBE 48.0248% -89 - C2 -2FF7 6.4
71 PsiBlast_CBE 47.9647% -89 - C2 -2FFB 6.2
74 PsiBlast_CBE 47.4647% -87 - C2 -2FGJ 6.9 HLYBP_ECOLX
83 PsiBlast_CBE 47.2442% -88 - C2 -3VX4 6.7 ?
75 PsiBlast_CBE 47.0947% -88 - C2 -2FGJ 7.2 HLYBP_ECOLX
77 PsiBlast_CBE 47.0447% -87 - C2 -2FFA 6.4
109 HHSearch 46.7839% -87 - C2 -3VX4 6.8 ?
57 PsiBlast_CBE 46.3047% -89 - C2 -1MV5 5.4 LMRA_LACLA
112 HHSearch 45.3447% -88 - C2 -1MV5 6.4 LMRA_LACLA
72 PsiBlast_CBE 45.0247% -90 - C2 -3B5J 6.7
59 PsiBlast_CBE 44.6547% -87 - C2 -1MV5 6.3 LMRA_LACLA
56 PsiBlast_CBE 43.2547% -85 - C2 -1MV5 5.0
58 PsiBlast_CBE 43.0347% -83 - C2 -1MV5 6.3 LMRA_LACLA
102 PsiBlast_CBE 42.0731% -98 - C2 -4MKI 1.8 ECFA2_CALS4
99 PsiBlast_CBE 39.9534% -80 - C2 -4U00 4.5 ?
101 PsiBlast_CBE 39.8131% -95 - C2 -4MKI 2.1 ECFA2_CALS4