@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA5013: (2016-03-03 )
MSMADRDGVIWYDGELVQWRDATTHVLTHTLHYGMGVFEGVRAYDTPQGTAIFRLQAHTDRLFDSAHIMNMQIPYSRDEINEATRAAVRENNLESAYIRPMVFYGSEGMGLRASGLKVHVIIAAWSWGAYMGEEALQQGIKVRTSSFTRHHVNISMTRAKSNGAYINSMLALQEAISGGADEAMMLDPEGYVAEGSGENIFIIKDGVIYTPEVTACLNGITRNTILTLAAEHGFKLVEKRITRDEVYIADEAFFTGTAAEVTPIREVDGRKIGAGRRGPVTEKLQKAYFDLVSGKTEAHAEWRTLVK

Atome Classification :

(46 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGU_K_11(1IYE)
ILVE_ECOLI
[Raw transfer]




PGU_G_7(1IYE)
ILVE_ECOLI
[Raw transfer]




PGU_I_9(1IYE)
ILVE_ECOLI
[Raw transfer]




PGU_G_7(1IYE)
ILVE_ECOLI
[Raw transfer]




GUA_M_13(1IYD)
ILVE_ECOLI
[Raw transfer]




GUA_O_15(1IYD)
ILVE_ECOLI
[Raw transfer]




2ML_L_12(1I1L)
ILVE_ECOLI
[Raw transfer]




2ML_J_10(1I1L)
ILVE_ECOLI
[Raw transfer]




4MV_A_5(2EIY)
?
[Raw transfer]




4MV_B_7(2EIY)
?
[Raw transfer]




PLP_K_11(1I1L)
ILVE_ECOLI
[Raw transfer]




PLP_A_7(1I1M)
ILVE_ECOLI
[Raw transfer]




PLP_G_7(1I1L)
ILVE_ECOLI
[Raw transfer]




PLP_A_7(1A3G)
ILVE_ECOLI
[Raw transfer]




PLP_A_7(1A3G)
ILVE_ECOLI
[Raw transfer]




PLP_I_9(1I1L)
ILVE_ECOLI
[Raw transfer]




PLP_C_11(1I1K)
ILVE_ECOLI
[Raw transfer]




PLP_A_4(2EJ3)
?
[Raw transfer]




PLP_C_11(1A3G)
ILVE_ECOLI
[Raw transfer]




PLP_B_9(1A3G)
ILVE_ECOLI
[Raw transfer]




PLP_B_9(1I1K)
ILVE_ECOLI
[Raw transfer]




PLP_C_9(1WRV)
?
[Raw transfer]




PLP_A_4(2EIY)
?
[Raw transfer]




PLP_A_7(1IYD)
ILVE_ECOLI
[Raw transfer]




PLP_B_5(3JZ6)
ILVE_MYCS2
[Raw transfer]




PLP_C_8(2EIY)
?
[Raw transfer]




PLP_B_6(2EIY)
?
[Raw transfer]




PLP_C_13(1I1M)
ILVE_ECOLI
[Raw transfer]




PLP_B_8(1WRV)
?
[Raw transfer]




PLP_A_7(1WRV)
?
[Raw transfer]




PLP_C_8(2EJ3)
?
[Raw transfer]




PLP_C_11(1IYD)
ILVE_ECOLI
[Raw transfer]




PLP_B_10(1I1M)
ILVE_ECOLI
[Raw transfer]




PLP_B_6(2EJ3)
?
[Raw transfer]




PLP_A_4(2EIY)
?
[Raw transfer]




PLP_A_7(1I1K)
ILVE_ECOLI
[Raw transfer]




PLP_A_3(3JZ6)
ILVE_MYCS2
[Raw transfer]




PLP_B_9(1IYD)
ILVE_ECOLI
[Raw transfer]




PLP_B_5(3DTG)
ILVE_MYCS2
[Raw transfer]




PLP_A_3(3DTG)
ILVE_MYCS2
[Raw transfer]




GLU_A_4(3UZO)
?
[Raw transfer]




GBN_A_5(2EJ3)
?
[Raw transfer]




GBN_B_7(2EJ3)
?
[Raw transfer]




PLP_A_2(3WWH)
?
[Raw transfer]




OBZ_A_4(3DTG)
ILVE_MYCS2
[Raw transfer]




MPD_A_10(1WRV)
?
[Raw transfer]




MPD_B_11(1WRV)
?
[Raw transfer]




26 PsiBlast_CBE 99.0863% -95 - C7 -4WHX - ? -
1 PsiBlast_PDB 97.8963% -93 - C7 -3U0G - ? -
23 PsiBlast_CBE 97.8763% -96 - C7 -3U0G - ? -
21 PsiBlast_CBE 97.8063% -94 - C7 -3U0G - ? -
24 PsiBlast_CBE 97.2063% -94 - C7 -3U0G - ? -
22 PsiBlast_CBE 96.1863% -96 - C7 -3U0G - ? -
25 PsiBlast_CBE 95.5363% -94 - C7 -3U0G - ? -
94 HHSearch 95.4262% -93 - C7 -3U0G - ? -
34 PsiBlast_CBE 89.3946% -89 - C7 -2EJ0 - ? -
48 PsiBlast_CBE 88.6549% -90 - C7 -1I1M 3.9 ILVE_ECOLI
40 PsiBlast_CBE 88.6446% -88 - C7 -2EIY 4.3 ?
29 PsiBlast_CBE 88.4746% -88 - C7 -2EJ2 - ? -
42 PsiBlast_CBE 88.3346% -86 - C7 -1WRV 3.8 ?
46 PsiBlast_CBE 88.2949% -88 - C7 -1IYD 3.5 ILVE_ECOLI
43 PsiBlast_CBE 88.2449% -87 - C7 -1IYE 8.0 ILVE_ECOLI
10 PsiBlast_PDB 88.2249% -91 - C7 -1I1M 3.7 ILVE_ECOLI
47 PsiBlast_CBE 88.0949% -90 - C7 -1I1M 3.9 ILVE_ECOLI
95 HHSearch 88.0248% -81 - C7 -1IYE 8.0 ILVE_ECOLI
6 PsiBlast_PDB 87.9846% -88 - C7 -2EJ2 - ? -
44 PsiBlast_CBE 87.9349% -88 - C7 -1IYE 7.9 ILVE_ECOLI
50 PsiBlast_CBE 87.8649% -91 - C7 -1I1L 5.7 ILVE_ECOLI
12 PsiBlast_PDB 87.8549% -86 - C7 -1IYE 8.0 ILVE_ECOLI
41 PsiBlast_CBE 87.7346% -88 - C7 -1WRV 4.3 ?
9 PsiBlast_PDB 87.7249% -91 - C7 -1I1L 5.7 ILVE_ECOLI
4 PsiBlast_PDB 87.7246% -88 - C7 -2EIY 4.4 ?
11 PsiBlast_PDB 87.7049% -89 - C7 -1IYD 4.1 ILVE_ECOLI
96 HHSearch 87.6246% -86 - C7 -2EIY 4.4 ?
28 PsiBlast_CBE 87.5346% -85 - C7 -2EJ3 3.9 ?
7 PsiBlast_PDB 87.3746% -88 - C7 -2EJ3 4.3 ?
49 PsiBlast_CBE 87.1949% -90 - C7 -1I1L 5.4 ILVE_ECOLI
45 PsiBlast_CBE 87.0649% -86 - C7 -1IYD 3.8 ILVE_ECOLI
39 PsiBlast_CBE 86.9746% -89 - C7 -2EIY 4.5 ?
3 PsiBlast_PDB 86.5946% -89 - C7 -1WRV 4.3 ?
27 PsiBlast_CBE 86.4746% -87 - C7 -2EJ3 4.6 ?
8 PsiBlast_PDB 86.4449% -93 - C7 -1I1K 4.0 ILVE_ECOLI
52 PsiBlast_CBE 86.2049% -90 - C7 -1I1K 3.9 ILVE_ECOLI
51 PsiBlast_CBE 86.0049% -90 - C7 -1I1K 3.8 ILVE_ECOLI
54 PsiBlast_CBE 84.6549% -88 - C7 -1A3G 4.0 ILVE_ECOLI
13 PsiBlast_PDB 84.6249% -86 - C7 -1A3G 4.2 ILVE_ECOLI
53 PsiBlast_CBE 84.4249% -92 - C7 -1A3G 4.8 ILVE_ECOLI
84 Fugue 81.6045% -77 - C7 -1A3G 4.2 ILVE_ECOLI
67 PsiBlast_CBE 67.1731% -63 - C7 -3JZ6 3.7 ILVE_MYCS2
69 PsiBlast_CBE 66.4531% -64 - C7 -3DTG 3.1 ILVE_MYCS2
66 PsiBlast_CBE 65.7531% -82 - C7 -3WWH 5.6 ?
70 PsiBlast_CBE 65.5231% -61 - C7 -3DTG 3.8 ILVE_MYCS2
68 PsiBlast_CBE 64.3631% -59 - C7 -3JZ6 3.6 ILVE_MYCS2