@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA5098: (2016-03-04 )
MSLHLKPGQLTLADLRQAYLAPVRLSLDPSADAPIAASVACVENIIAEGRTAYGINTGFGLLASTRISPADLEKLQRSIVLSHAAGVGEALDDAMVRLVMLLKVNSLARGFSGIRRKVIDALIALINAEVYPHIPLKGSVGASGDLAPLAHMSLVLIGESRARHRGEWLPAAEALAVAGLEPLTLAAKEGLALLNGTQVSTAYALRGLFEAEDLFAAATVCGGLSVEAMLGSRAPFDARIHAARGQRGQIDVAAAYRDLLTASSEVARSHEKCDKVQDPYSLRCQPQVMGACLTQMRQAAEVLEIEANAVSDNPLVFAAEGDVISGGNFHAEPVAMAADNLALALAEIGSLSERRISLMMDMHMSQLPPFLVANGGVNSGFMIAQVTAAALASDNKALAHPASVDSLPTSANQEDHVSMAPNAGKRLWAMAENVRGILAVEWLGACQGLDFREGLKSSPKLEQARRLLRDKVPYYQEDRFFAPDIEAASQLLASGCLNALLPARLLPSL

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

296_A_4(2RJS)
TAM_STRGL
[Raw transfer]



247_A_3(2QVE)
TAM_STRGL
[Raw transfer]



295_A_3(2RJR)
TAM_STRGL
[Raw transfer]



CYS_A_2(1GKM)
HUTH_PSEPU
[Raw transfer]
1 PsiBlast_PDB 99.4781%-100 - C8 -1GK3 - HUTH_PSEPU -
4 PsiBlast_PDB 98.8881%-102 - C8 -1B8F - HUTH_PSEPU -
6 PsiBlast_PDB 98.8781%-102 - C8 -1EB4 - HUTH_PSEPU -
22 PsiBlast_CBE 98.5981% -98 - C8 -1GK2 - HUTH_PSEPU -
5 PsiBlast_PDB 98.5781%-102 - C8 -1GKJ - HUTH_PSEPU -
23 PsiBlast_CBE 98.3081% -99 - C8 -1GK2 - HUTH_PSEPU -
21 PsiBlast_CBE 98.2481% -98 - C8 -1GK2 - HUTH_PSEPU -
2 PsiBlast_PDB 98.2381%-100 - C8 -1GK2 - HUTH_PSEPU -
3 PsiBlast_PDB 77.7681% -32 - C8 -1GKM 2.5 HUTH_PSEPU
49 HHSearch 77.6436% -85 - C8 -2O6Y - TALY_RHOS4 -
14 PsiBlast_PDB 77.4337% -83 - C8 -2O6Y - TALY_RHOS4 -
11 PsiBlast_PDB 75.6535% -83 - C8 -2OHY - TAM_STRGL -
48 HHSearch 75.3729% -87 - C8 -2NYN - PAL_ANAVT -
8 PsiBlast_PDB 75.2935% -84 - C8 -3KDY - TAM_STRGL -
56 Fugue 70.9027% -92 * C8 *2NYF - PAL_NOSP7 -
20 PsiBlast_PDB 69.2131% -82 - C8 -4C6G - PAM_TAXWC -
7 PsiBlast_PDB 66.1332% -46 - C8 -3UNV - ? -
24 PsiBlast_CBE 65.4532% -46 - C8 -3UNV - ? -
16 PsiBlast_PDB 59.7437% -26 - C8 -2O7D - TALY_RHOS4 -
15 PsiBlast_PDB 59.5837% -25 - C8 -2O7B - TALY_RHOS4 -
10 PsiBlast_PDB 58.8935% -28 - C8 -2RJS Error TAM_STRGL
9 PsiBlast_PDB 58.8735% -27 - C8 -2RJR 2.9 TAM_STRGL
12 PsiBlast_PDB 58.7135% -27 - C8 -2QVE 3.8 TAM_STRGL