@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA5161: (2016-03-05 )
MTILVTGSAGFIGANFVLDWLALHDEPVVSLDKLTYAGNRQNLASLDGDARHTFVAGDIGDSQLVARLLAEHQPRAILNFAAESHVDRSIHGPEDFIQTNIVGTFRLLEEVRAYWGALEPEAKAAFRFLHVSTDEVYGSLAPSDPAFTENNRYEPNSPYSASKAASDHLVRAYHHTYGLPVLTTNCSNNYGPYHFPEKLIPLVIHNALAGKPLPIYGDGQQIRDWLYVKDHCSAIRRVLEAGQLGETYNVGGWNEKANLDVVETLCAILDQEQPRADGRSYREQITFVKDRPGHDRRYAIDATRLERELGWKPAETFETGIRKTVRWYLDNQDWVANVTSGAYREWVGKQYA

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_A_2(1R6D)
?
[Raw transfer]



NAD_H_8(1KER)
?
[Raw transfer]



NAD_F_6(1KEW)
RMLB_SALTY
[Raw transfer]



NAD_E_5(1KEW)
RMLB_SALTY
[Raw transfer]



DAU_C_3(1KEU)
RMLB_SALTY
[Raw transfer]



DAU_D_4(1KEU)
RMLB_SALTY
[Raw transfer]



NAD_A_2(1R6D)
?
[Raw transfer]



NAD_E_5(1KEW)
RMLB_SALTY
[Raw transfer]



NAD_C_3(2HUN)
?
[Raw transfer]



NAD_F_6(1KEU)
RMLB_SALTY
[Raw transfer]



NAD_E_5(1KEU)
RMLB_SALTY
[Raw transfer]



NAD_C_3(2HUN)
?
[Raw transfer]



NAD_F_6(1KET)
RMLB_STRMU
[Raw transfer]



NAD_E_5(1KET)
RMLB_STRMU
[Raw transfer]



NAD_D_4(2HUN)
?
[Raw transfer]



NAD_A_4(1OC2)
?
[Raw transfer]



NAD_A_3(1R66)
?
[Raw transfer]



NAD_A_4(1OC2)
?
[Raw transfer]



NAD_I_9(1KER)
?
[Raw transfer]



NAD_B_8(1OC2)
?
[Raw transfer]



NAD_A_3(1BXK)
RMLB2_ECOLI
[Raw transfer]



NAD_F_6(1KEP)
RMLB_STRMU
[Raw transfer]



NAD_B_4(1BXK)
RMLB2_ECOLI
[Raw transfer]



NAD_G_7(1KEP)
RMLB_STRMU
[Raw transfer]
32 HHSearch 95.4962% -84 - C1 -1KEW 12.7 RMLB_SALTY
3 PsiBlast_PDB 94.5261% -84 - C1 -1KEW 12.7 RMLB_SALTY
21 PsiBlast_CBE 93.9761% -84 - C1 -1KEW 12.5 RMLB_SALTY
22 PsiBlast_CBE 93.9061% -83 - C1 -1KEU 12.2 RMLB_SALTY
24 PsiBlast_CBE 93.1961% -84 - C1 -1G1A - RMLB_SALTY -
2 PsiBlast_PDB 92.9261% -82 - C1 -1KEU 12.3 RMLB_SALTY
23 PsiBlast_CBE 92.5261% -85 - C1 -1G1A - RMLB_SALTY -
25 PsiBlast_CBE 92.2561% -83 - C1 -1G1A - RMLB_SALTY -
1 PsiBlast_PDB 91.2661% -83 - C1 -1G1A - RMLB_SALTY -
4 PsiBlast_PDB 88.0160% -86 - C1 -1BXK 11.3 RMLB2_ECOLI
26 PsiBlast_CBE 87.7560% -81 - C1 -1BXK 11.8 RMLB2_ECOLI
5 PsiBlast_PDB 83.2949% -93 - C1 -4EGB - ? -
38 HHSearch 81.4549% -93 - C1 -2HUN 10.0 ?
6 PsiBlast_PDB 80.1647% -87 - C1 -2HUN 10.0 ?
34 HHSearch 79.7150% -83 - C1 -1R6D 10.7 ?
8 PsiBlast_PDB 75.8748% -79 - C1 -1R6D 10.7 ?
27 PsiBlast_CBE 75.7247% -84 - C1 -2HUN 10.8 ?
41 HHSearch 75.6148% -78 * C1 *1OC2 12.1 ?
28 PsiBlast_CBE 75.4645% -75 - C1 -1OC2 12.4 ?
30 PsiBlast_CBE 74.7445% -75 - C1 -1KER 12.8 ?
7 PsiBlast_PDB 74.5649% -82 - C1 -1R66 10.7 ?
29 PsiBlast_CBE 74.3345% -76 - C1 -1KET 12.4 RMLB_STRMU
31 PsiBlast_CBE 73.9945% -73 - C1 -1KEP 12.4 RMLB_STRMU
10 PsiBlast_PDB 73.5745% -76 - C1 -1KER 12.6 ?
11 PsiBlast_PDB 73.4345% -75 - C1 -1KET 12.6 RMLB_STRMU
9 PsiBlast_PDB 72.8845% -75 - C1 -1KEP 12.6 RMLB_STRMU
12 PsiBlast_PDB 72.6945% -76 - C1 -1OC2 12.1 ?