@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA5164: (2016-03-05 )
MKATRLAIPDVILFEPRVFGDDRGFFFESYNQRAFEEACGHPVSFVQDNHSRSARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYKTTDFWAPEHERCIVWNDPELKIDWPLQDAPLLSEKDRQGKAFADADCFP

Atome Classification :

(37 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TDO_A_3(2IXK)
RMLC_PSEAE
[Raw transfer]




TDO_A_3(2IXK)
RMLC_PSEAE
[Raw transfer]




TRH_A_3(2IXH)
RMLC_PSEAE
[Raw transfer]




TDO_B_4(2IXK)
RMLC_PSEAE
[Raw transfer]




TRH_B_4(2IXH)
RMLC_PSEAE
[Raw transfer]




TRH_C_7(2IXC)
RMLC_MYCTU
[Raw transfer]




TRH_A_5(2IXC)
RMLC_MYCTU
[Raw transfer]




18T_A_7(4HMZ)
CHMJ_STRBI
[Raw transfer]




TRH_D_8(2IXC)
RMLC_MYCTU
[Raw transfer]




TRH_B_6(2IXC)
RMLC_MYCTU
[Raw transfer]




DAU_A_4(1NYW)
?
[Raw transfer]




ATY_D_6(1DZT)
RMLC_SALTY
[Raw transfer]




SRT_A_3(2IXJ)
RMLC_PSEAE
[Raw transfer]




SRT_C_3(1RTV)
RMLC_PSEAE
[Raw transfer]




18T_D_15(4HMZ)
CHMJ_STRBI
[Raw transfer]




GOL_A_7(1DZR)
RMLC_SALTY
[Raw transfer]




GOL_A_7(1DZR)
RMLC_SALTY
[Raw transfer]




GOL_A_7(1DZR)
RMLC_SALTY
[Raw transfer]




GOL_A_7(1DZR)
RMLC_SALTY
[Raw transfer]




TDX_B_7(1NZC)
?
[Raw transfer]




TYD_A_4(3RYK)
?
[Raw transfer]




TYD_C_3(1EPZ)
RMLC_METTH
[Raw transfer]




TYD_B_5(2IXI)
RMLC_PSEAE
[Raw transfer]




DAU_B_3(1NYW)
?
[Raw transfer]




TPE_D_5(1DZT)
RMLC_SALTY
[Raw transfer]




TYD_A_9(4HN1)
CHMJ_STRBI
[Raw transfer]




GOL_A_3(1OFN)
?
[Raw transfer]




TYD_B_14(4HN1)
CHMJ_STRBI
[Raw transfer]




TYD_A_3(2IXI)
RMLC_PSEAE
[Raw transfer]




TYD_C_19(4HN1)
CHMJ_STRBI
[Raw transfer]




POP_A_3(3RYK)
?
[Raw transfer]




TYD_C_18(4HN1)
CHMJ_STRBI
[Raw transfer]




POP_A_3(3RYK)
?
[Raw transfer]




TRH_C_8(2IXL)
?
[Raw transfer]




23 PsiBlast_CBE 98.28100%-104 - C6 -2IXI 3.1 RMLC_PSEAE
22 PsiBlast_CBE 97.98100%-105 - C6 -2IXK 5.3 RMLC_PSEAE
83 HHSearch 97.91100%-108 - C6 -2IXK 5.1 RMLC_PSEAE
5 PsiBlast_PDB 97.88100%-108 - C6 -2IXK 5.1 RMLC_PSEAE
3 PsiBlast_PDB 97.53100%-107 - C6 -2IXH 7.1 RMLC_PSEAE
21 PsiBlast_CBE 97.08100%-107 - C6 -2IXH 6.6 RMLC_PSEAE
1 PsiBlast_PDB 96.95100%-107 - C6 -1RTV 3.4 RMLC_PSEAE
4 PsiBlast_PDB 96.79100%-105 - C6 -2IXI 2.4 RMLC_PSEAE
2 PsiBlast_PDB 96.70100%-103 - C6 -2IXJ 3.2 RMLC_PSEAE
74 Fugue 85.3661%-101 - C6 -1DZR 3.1 RMLC_SALTY
73 Fugue 85.3661%-101 - C6 -1DZR 3.1 RMLC_SALTY
87 HHSearch 84.4063% -99 - C6 -1DZR 3.1 RMLC_SALTY
24 PsiBlast_CBE 82.8565%-104 - C6 -1DZT 3.7 RMLC_SALTY
6 PsiBlast_PDB 82.4365%-104 - C6 -1DZR 3.1 RMLC_SALTY
25 PsiBlast_CBE 82.1865%-102 - C6 -1DZR - RMLC_SALTY -
88 HHSearch 81.5549% -93 - C6 -1EP0 - RMLC_METTH -
7 PsiBlast_PDB 80.8765%-100 - C6 -1DZT 2.6 RMLC_SALTY
28 PsiBlast_CBE 78.7540% -91 - C6 -2IXC 5.8 RMLC_MYCTU
86 HHSearch 78.1140% -87 - C6 -2C0Z - NOVW_STRNV -
9 PsiBlast_PDB 78.0951% -90 - C6 -1EPZ 2.8 RMLC_METTH
27 PsiBlast_CBE 77.1340% -89 - C6 -2IXC 4.6 RMLC_MYCTU
14 PsiBlast_PDB 76.5440% -90 - C6 -2IXC 6.5 RMLC_MYCTU
29 PsiBlast_CBE 76.4840% -87 - C6 -2IXC 3.6 RMLC_MYCTU
32 PsiBlast_CBE 75.9435% -87 - C6 -1OFN 2.0 ?
89 HHSearch 75.9347% -94 * C6 *3RYK 3.7 ?
26 PsiBlast_CBE 75.1549% -97 - C6 -3RYK 3.8 ?
10 PsiBlast_PDB 75.1349% -97 - C6 -3RYK 3.7 ?
39 PsiBlast_CBE 70.3236% -70 - C6 -4HMZ 5.5 CHMJ_STRBI
55 PsiBlast_CBE 70.2734%-101 - C6 -1NYW 4.7 ?
48 PsiBlast_CBE 70.2234%-105 - C6 -2IXL 3.4 ?
45 PsiBlast_CBE 69.5735% -68 - C6 -4HN1 4.1 CHMJ_STRBI
43 PsiBlast_CBE 69.5235% -69 - C6 -4HN1 4.2 CHMJ_STRBI
36 PsiBlast_CBE 68.8936% -65 - C6 -4HMZ 3.1 CHMJ_STRBI
46 PsiBlast_CBE 68.5235% -71 - C6 -4HN1 3.0 CHMJ_STRBI
53 PsiBlast_CBE 68.1534%-100 - C6 -1NZC 4.4 ?
44 PsiBlast_CBE 68.0335% -68 - C6 -4HN1 4.2 CHMJ_STRBI
56 PsiBlast_CBE 66.6234% -97 - C6 -1NYW 4.8 ?