@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA5172: (2016-03-05 )
MAFNMHNRNLLSLMHHSTRELRYLLDLSRDLKRAKYTGTEQQHLKRKNIALIFEKTSTRTRCAFEVAAYDQGANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQEIVEELAKFAGVPVFNGLTDEYHPTQMLADVLTMREHSDKPLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLPAFHNSETKVGKQIAEQYPNLANGIEVTEDVFESPYNIAFEQAENRMHTIKAILVSTLADI

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PSQ_D_4(1DUV)
OTC1_ECOLI
[Raw transfer]




PSQ_F_6(1DUV)
OTC1_ECOLI
[Raw transfer]




PSQ_E_5(1DUV)
OTC1_ECOLI
[Raw transfer]




CIR_A_5(4JQO)
OTC_VIBVU
[Raw transfer]




CIR_B_11(4JQO)
OTC_VIBVU
[Raw transfer]




PAO_D_4(1OTH)
OTC_HUMAN
[Raw transfer]




CIR_C_16(4JQO)
OTC_VIBVU
[Raw transfer]




PAO_D_4(1OTH)
OTC_HUMAN
[Raw transfer]




CP_A_4(4JFR)
OTC_VIBVU
[Raw transfer]




CP_A_5(4H31)
OTC_VIBVU
[Raw transfer]




PUW_B_9(4A8H)
PTC_ENTFA
[Raw transfer]




CP_C_13(2I6U)
OTC_MYCTU
[Raw transfer]




PAO_A_2(4A8T)
PTC_ENTFA
[Raw transfer]




PUW_A_3(4A8H)
PTC_ENTFA
[Raw transfer]




CP_B_6(4JFR)
OTC_VIBVU
[Raw transfer]




CP_G_7(1C9Y)
OTC_HUMAN
[Raw transfer]




CP_B_10(4NF2)
OTC_BACAN
[Raw transfer]




CP_C_12(4NF2)
OTC_BACAN
[Raw transfer]




CP_A_9(2I6U)
OTC_MYCTU
[Raw transfer]




CP_D_4(1EP9)
OTC_HUMAN
[Raw transfer]




CP_A_9(2I6U)
OTC_MYCTU
[Raw transfer]




CP_B_11(2I6U)
OTC_MYCTU
[Raw transfer]




CP_A_4(4NF2)
OTC_BACAN
[Raw transfer]




CP_J_10(1FVO)
OTC_HUMAN
[Raw transfer]




CP_G_7(1FVO)
OTC_HUMAN
[Raw transfer]




ARG_A_6(4JHX)
OTC_VIBVU
[Raw transfer]




PE5_B_26(4H31)
OTC_VIBVU
[Raw transfer]




92 HHSearch 99.02100%-102 - C7 -1DXH - OTCC_PSEAE -
1 PsiBlast_PDB 99.02100%-102 - C7 -1DXH - OTCC_PSEAE -
2 PsiBlast_PDB 96.7199%-103 - C7 -1ORT - OTCC_PSEAE -
113 Fugue 96.5299%-106 - C7 -1ORT - OTCC_PSEAE -
3 PsiBlast_PDB 87.6166%-105 - C7 -3UPD - OTC_VIBVU -
25 PsiBlast_CBE 86.7766%-100 - C7 -4JHX - OTC_VIBVU -
27 PsiBlast_CBE 86.6866% -99 - C7 -4JFR - OTC_VIBVU -
21 PsiBlast_CBE 86.4866%-100 - C7 -4KWT - OTC_VIBVU -
22 PsiBlast_CBE 86.3566% -98 - C7 -4KWT - OTC_VIBVU -
26 PsiBlast_CBE 86.0666% -99 - C7 -4JHX - OTC_VIBVU -
4 PsiBlast_PDB 85.9466% -98 - C7 -4H31 5.1 OTC_VIBVU
29 PsiBlast_CBE 85.2866% -95 - C7 -4H31 - OTC_VIBVU -
7 PsiBlast_PDB 85.2866% -96 - C7 -4JQO 3.6 OTC_VIBVU
6 PsiBlast_PDB 85.2766% -96 - C7 -4JHX 2.8 OTC_VIBVU
30 PsiBlast_CBE 85.2366% -94 - C7 -4H31 2.4 OTC_VIBVU
24 PsiBlast_CBE 85.2366% -94 - C7 -4JQO 3.7 OTC_VIBVU
5 PsiBlast_PDB 85.2166% -95 - C7 -4JFR 4.7 OTC_VIBVU
23 PsiBlast_CBE 85.0766% -94 - C7 -4JQO 3.7 OTC_VIBVU
28 PsiBlast_CBE 85.0566% -95 - C7 -4JFR 4.4 OTC_VIBVU
8 PsiBlast_PDB 83.3857%-101 - C7 -1AKM - OTC1_ECOLI -
32 PsiBlast_CBE 82.9357% -92 - C7 -1DUV 6.8 OTC1_ECOLI
9 PsiBlast_PDB 82.1357% -91 - C7 -1DUV 6.9 OTC1_ECOLI
31 PsiBlast_CBE 82.0157% -91 - C7 -1DUV 6.7 OTC1_ECOLI
96 HHSearch 71.8840% -90 - C7 -1OTH 7.5 OTC_HUMAN
60 PsiBlast_CBE 71.8136% -86 - C7 -4A8H 6.2 PTC_ENTFA
59 PsiBlast_CBE 71.4836% -88 - C7 -4A8H 6.5 PTC_ENTFA
52 PsiBlast_CBE 71.3336% -88 - C7 -4A8T 6.0 PTC_ENTFA
43 PsiBlast_CBE 70.8937% -87 - C7 -1FVO 4.0 OTC_HUMAN
46 PsiBlast_CBE 70.5837% -86 - C7 -4NF2 5.0 OTC_BACAN
45 PsiBlast_CBE 70.5837% -84 - C7 -1EP9 4.9 OTC_HUMAN
20 PsiBlast_PDB 70.5237% -84 - C7 -1C9Y 4.7 OTC_HUMAN
19 PsiBlast_PDB 70.3737% -83 - C7 -1OTH 7.5 OTC_HUMAN
48 PsiBlast_CBE 70.1837% -85 - C7 -4NF2 4.9 OTC_BACAN
44 PsiBlast_CBE 69.9337% -80 - C7 -1FVO 3.8 OTC_HUMAN
47 PsiBlast_CBE 69.9237% -85 - C7 -4NF2 4.9 OTC_BACAN
99 HHSearch 68.7638% -82 - C7 -2I6U 4.1 OTC_MYCTU
84 PsiBlast_CBE 66.4436% -82 - C7 -2I6U 4.2 OTC_MYCTU
85 PsiBlast_CBE 65.5936% -80 - C7 -2I6U 4.4 OTC_MYCTU
86 PsiBlast_CBE 64.6436% -81 - C7 -2I6U 4.1 OTC_MYCTU