@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA5188: (2016-03-05 )
MSQNFSFRQAAVIGAGTMGRGIVMCLANAGLDVQWLDSNPQMLNQALGAVADTYAHNVRQGRIGEEEAAARRARITPVQHLAAMREADLVIEAVYENLELKQSIFRELDAALKPSAVLASNTSYLDIDAIAAVTARPRQVLGLHFFSPAHIMRLLEIVRGAQTAPAVLEAALALGERMGKVSVVAGNCHGFIGNRMLEPYATEARLMLLEGALPYQVDRALQAFGFAMGPFRMYDVVGIDLEWRARELAGVGQDQPAVQVDNRLCEMGRFGQKSGAGYYRYAPGSRQAEHDTEVDALVLRVAETLGYPRRDFADEEILERCLLALVNEGAKILDEGIAARSADIDTVYLNGYGFPAAEGGPMAWADRLGAADLLQRLRFLEQRHGARWKPASLVERLAAEGGAFADLQEVR

Atome Classification :

(44 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_F_6(1M76)
HCDH_HUMAN
[Raw transfer]




NAD_E_5(1M76)
HCDH_HUMAN
[Raw transfer]




NAD_E_5(1IL0)
HCDH_HUMAN
[Raw transfer]




NAD_E_5(1F0Y)
HCDH_HUMAN
[Raw transfer]




NAD_E_5(1F0Y)
HCDH_HUMAN
[Raw transfer]




NAD_E_5(1IL0)
HCDH_HUMAN
[Raw transfer]




NAD_E_5(1M75)
HCDH_HUMAN
[Raw transfer]




NAD_F_6(1M75)
HCDH_HUMAN
[Raw transfer]




NAD_B_6(4KUG)
?
[Raw transfer]




NAD_F_6(1F0Y)
HCDH_HUMAN
[Raw transfer]




NAD_D_4(1LSO)
HCDH_HUMAN
[Raw transfer]




NAD_C_7(4KUG)
?
[Raw transfer]




NAD_F_6(1IL0)
HCDH_HUMAN
[Raw transfer]




NAD_D_8(4KUG)
?
[Raw transfer]




NAD_F_6(3HDH)
HCDH_PIG
[Raw transfer]




NAD_A_3(3HAD)
HCDH_HUMAN
[Raw transfer]




NAD_B_4(3HAD)
HCDH_HUMAN
[Raw transfer]




NAD_A_5(4KUG)
?
[Raw transfer]




NAI_B_4(1F17)
HCDH_HUMAN
[Raw transfer]




NAI_A_3(1F17)
HCDH_HUMAN
[Raw transfer]




NAD_D_4(1LSJ)
HCDH_HUMAN
[Raw transfer]




NAD_C_3(1LSO)
HCDH_HUMAN
[Raw transfer]




NAD_E_5(3HDH)
HCDH_PIG
[Raw transfer]




NAD_C_3(1LSJ)
HCDH_HUMAN
[Raw transfer]




119 HHSearch 96.2138% -97 - C2 -1ZCJ - ECHP_RAT -
21 PsiBlast_CBE 95.3339%-107 - C2 -2X58 - ECHP_RAT -
5 PsiBlast_PDB 95.1039%-108 - C2 -3ZW9 - ECHP_RAT -
2 PsiBlast_PDB 95.0639%-106 - C2 -2X58 - ECHP_RAT -
7 PsiBlast_PDB 95.0539%-107 - C2 -3ZWC - ECHP_RAT -
1 PsiBlast_PDB 94.8739%-102 - C2 -1ZCJ - ECHP_RAT -
25 PsiBlast_CBE 94.4439%-107 - C2 -3ZW9 - ECHP_RAT -
4 PsiBlast_PDB 94.1439%-103 - C2 -3ZW8 - ECHP_RAT -
26 PsiBlast_CBE 93.8539%-107 - C2 -3ZW8 - ECHP_RAT -
6 PsiBlast_PDB 93.5839%-105 - C2 -3ZWA - ECHP_RAT -
24 PsiBlast_CBE 93.3839%-105 - C2 -3ZWA - ECHP_RAT -
23 PsiBlast_CBE 93.0039%-107 - C2 -3ZWC - ECHP_RAT -
3 PsiBlast_PDB 92.8839%-104 - C2 -3ZWB - ECHP_RAT -
22 PsiBlast_CBE 92.2039%-105 - C2 -3ZWB - ECHP_RAT -
30 PsiBlast_CBE 91.6532% -97 - C2 -1WDK - FADB_PSEFR -
108 Fugue 91.1630% -90 - C2 -1WDK - FADB_PSEFR -
121 HHSearch 90.5233% -99 - C2 -3MOG - PAAH_ECOLI -
27 PsiBlast_CBE 90.0632% -94 - C2 -2D3T - FADB_PSEFR -
10 PsiBlast_PDB 89.9232% -98 - C2 -1WDL - FADB_PSEFR -
12 PsiBlast_PDB 89.8331%-101 - C2 -4B3H - ? -
123 HHSearch 76.2530% -91 * C2 *1F0Y 9.9 HCDH_HUMAN
15 PsiBlast_PDB 75.3433%-100 - C2 -4KUG 8.5 ?
36 PsiBlast_CBE 75.1333%-102 - C2 -4KUG 8.3 ?
35 PsiBlast_CBE 74.9833%-101 - C2 -4KUG 7.7 ?
109 Fugue 73.6830% -93 - C2 -1IL0 9.4 HCDH_HUMAN
82 PsiBlast_CBE 73.6231% -89 - C2 -1M75 9.0 HCDH_HUMAN
34 PsiBlast_CBE 73.3333%-102 - C2 -4KUG 7.2 ?
77 PsiBlast_CBE 72.5231% -89 - C2 -1IL0 9.6 HCDH_HUMAN
74 PsiBlast_CBE 72.2631% -91 - C2 -1LSJ 7.3 HCDH_HUMAN
75 PsiBlast_CBE 72.2131% -94 - C2 -1LSJ 6.9 HCDH_HUMAN
71 PsiBlast_CBE 71.8331% -85 - C2 -1F0Y 9.8 HCDH_HUMAN
76 PsiBlast_CBE 71.6831% -85 - C2 -1IL0 9.0 HCDH_HUMAN
83 PsiBlast_CBE 71.5331% -89 - C2 -1M75 9.1 HCDH_HUMAN
80 PsiBlast_CBE 71.4231% -87 - C2 -1M76 9.2 HCDH_HUMAN
65 PsiBlast_CBE 71.1831% -87 - C2 -1F17 8.6 HCDH_HUMAN
81 PsiBlast_CBE 70.8731% -87 - C2 -1M76 10.3 HCDH_HUMAN
73 PsiBlast_CBE 70.8431% -89 - C2 -3HAD 7.5 HCDH_HUMAN
70 PsiBlast_CBE 70.7331% -85 - C2 -1F0Y 9.3 HCDH_HUMAN
64 PsiBlast_CBE 70.6331% -91 - C2 -1F17 8.9 HCDH_HUMAN
79 PsiBlast_CBE 70.5631% -88 - C2 -1LSO 8.9 HCDH_HUMAN
72 PsiBlast_CBE 70.3331% -93 - C2 -3HAD 8.9 HCDH_HUMAN
68 PsiBlast_CBE 70.3031% -86 - C2 -3HDH 8.6 HCDH_PIG
78 PsiBlast_CBE 69.7831% -92 - C2 -1LSO 8.2 HCDH_HUMAN
69 PsiBlast_CBE 69.5231% -88 - C2 -3HDH 8.3 HCDH_PIG