@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA5192: (2016-03-05 )
MTQANNAVYTDISAAQLVEEAIRRGEGELAANGSLVVRTGHRTGRSPVDRFIVEEPSTKDAIAWGNINRPFPADKFDALWARVEAFNNAQDHFVSHVHVGSAEAYYLPVKMTTATAWQNLFGRCLFIEPEQYNPAGKDEWQVLNVANFECVPERDGTNSDGCVILNFAQKKVLIAGMRYAGEMKKAMFSVQNFLLPERDVLPMHCAANIGEAGDVTLFFGLSGTGKTTLSADESRYLIGDDEHGWGEGVVFNVEGGCYAKCIDLSEKNEPVIWKAIKFGAVLENVVLDEERVPNYADDSLTQNSRAAYPLEHVEKRSEKNLGGEPNAVIFLTCDLTGVLPPVSILNNEQAAYHFLSGYTALVGSTEMGSGGGIKSTFSTCFGAPFFPRPAGVYAELLIKRIKAFGSKVYLVNTGWTGGGYGVGKRFNIPTTRGVIAAIQSGALIGAETEHLEIINLDVPKAVPGVETNLLNPRNTWADKAAYDEAAKGLAKQFIENFKKFEVSDAIKAAGPQL

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_3(1K3D)
PCKA_ECOLI
[Raw transfer]



ATP_X_5(2PY7)
PCKA_ECOLI
[Raw transfer]



ATP_A_7(1YTM)
PCKA_ANASU
[Raw transfer]



ATP_A_4(1OS1)
PCKA_ECOLI
[Raw transfer]



ATP_A_6(2OLR)
PCKA_ECOLI
[Raw transfer]



ATP_A_6(2OLR)
PCKA_ECOLI
[Raw transfer]



ATP_A_4(1AQ2)
PCKA_ECOLI
[Raw transfer]



ATP_X_5(2PXZ)
PCKA_ECOLI
[Raw transfer]



ADP_A_3(1K3C)
PCKA_ECOLI
[Raw transfer]



ATP_A_7(1YTM)
PCKA_ANASU
[Raw transfer]



ATP_A_4(2OLQ)
PCKA_ECOLI
[Raw transfer]



ATP_B_8(1YTM)
PCKA_ANASU
[Raw transfer]



ATP_A_11(1XKV)
PCKA_THET8
[Raw transfer]



PYR_A_8(1YLH)
PCKA_ACTSZ
[Raw transfer]
21 PsiBlast_CBE 99.8548% -95 - C3 -2PC9 - PCKA_THET8 -
2 PsiBlast_PDB 99.3348% -94 - C3 -2PC9 - PCKA_THET8 -
22 PsiBlast_CBE 98.7748% -91 - C3 -2PC9 - PCKA_THET8 -
1 PsiBlast_PDB 98.6648% -93 - C3 -1XKV 6.5 PCKA_THET8
4 PsiBlast_PDB 94.7643% -85 - C3 -1YLH 2.6 PCKA_ACTSZ
3 PsiBlast_PDB 94.0743% -85 - C3 -1YGG - PCKA_ACTSZ -
48 Fugue 93.7940% -79 - C3 -1II2 - PCKA_TRYCR -
25 HHSearch 93.6440% -78 - C3 -1II2 - PCKA_TRYCR -
27 HHSearch 93.5244% -81 - C3 -2OLR 9.4 PCKA_ECOLI
6 PsiBlast_PDB 93.2144% -84 - C3 -1K3D 7.5 PCKA_ECOLI
16 PsiBlast_PDB 93.1640% -81 - C3 -1II2 - PCKA_TRYCR -
24 PsiBlast_CBE 93.1540% -84 - C3 -1II2 - PCKA_TRYCR -
5 PsiBlast_PDB 93.1544% -84 - C3 -1K3C 8.6 PCKA_ECOLI
12 PsiBlast_PDB 93.1144% -82 - C3 -2PY7 9.6 PCKA_ECOLI
7 PsiBlast_PDB 92.6244% -79 - C3 -1OS1 8.2 PCKA_ECOLI
8 PsiBlast_PDB 92.6044% -83 - C3 -2OLQ 9.4 PCKA_ECOLI
10 PsiBlast_PDB 92.4744% -83 - C3 -1AQ2 9.0 PCKA_ECOLI
9 PsiBlast_PDB 92.4144% -81 - C3 -2OLR 9.4 PCKA_ECOLI
11 PsiBlast_PDB 92.0144% -84 - C3 -2PXZ 9.7 PCKA_ECOLI
13 PsiBlast_PDB 91.9844% -91 - C3 -1OEN - PCKA_ECOLI -
28 HHSearch 90.9042% -80 - C3 -1YTM 9.3 PCKA_ANASU
23 PsiBlast_CBE 89.5344% -81 - C3 -1YTM 9.4 PCKA_ANASU
15 PsiBlast_PDB 89.1644% -82 - C3 -1YTM 9.3 PCKA_ANASU