@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA5224: (2016-03-05 )
MIRIPKSEYARRRKALMAQMEPNSIAILPAAPMYIRNRDVEHVYRQDSDFQYLTGFPEPEAVMALIPGRAHGEYVLFCRERDPERELWDGLRAGQDGAIGQYGADDAFPIGDIDDILPGLIEGRDRVYYALGANPDFDRRLMDWINVIRSKARQGAQPPNEFVALDHLLHDQRLYKSANEVKVMRYAAEVSARAHIRAMEVCRPGLFEYHLEAELEYEFRKGGAKMPAYGSIVAAGRNACILHYRENDAAIKDGDLILIDAGCEIDCYASDITRTFPANGRFSPEQKAIYELVLEANMAAFDYIAPGRHWNEAHEATVRVITAGLVRLGLLEGDVDELIAHEAYKAFYMHRAGHWLGMDVHDVGEYRVGGEWRVLEPGMAMTVEPGIYIAPDNTTVAKKWRGIGVRIEDDVVVTRNGCEVLTNGVPKTVAEIEALMAAAKSEAA

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

P6G_B_10(4PV4)
?
[Raw transfer]




1PE_A_5(4PV4)
?
[Raw transfer]




MRD_A_8(2BHB)
AMPP_ECOLI
[Raw transfer]




PG4_A_3(1WLR)
AMPP_ECOLI
[Raw transfer]




P6G_A_6(3CTZ)
XPP1_HUMAN
[Raw transfer]




MPD_A_5(2BWT)
AMPP_ECOLI
[Raw transfer]




MRD_A_6(2BWW)
AMPP_ECOLI
[Raw transfer]




CHAIN_B_2(1N51)
AMPP_ECOLI
[Raw transfer]

-

IPA_A_7(1WL6)
AMPP_ECOLI
[Raw transfer]




XPE_A_6(1WL6)
AMPP_ECOLI
[Raw transfer]




CHAIN_B_2(2V3Y)
AMPP_ECOLI
[Raw transfer]

-

CHAIN_B_2(2BHD)
AMPP_ECOLI
[Raw transfer]

-

LEU_A_3(2BH3)
AMPP_ECOLI
[Raw transfer]




LEU_A_3(2BN7)
AMPP_ECOLI
[Raw transfer]




CHAIN_B_2(2BHA)
AMPP_ECOLI
[Raw transfer]

-

EDO_B_12(4PV4)
?
[Raw transfer]




CHAIN_B_2(2V3Z)
AMPP_ECOLI
[Raw transfer]

-

CHAIN_B_2(2V3Z)
AMPP_ECOLI
[Raw transfer]

-

CHAIN_B_2(2V3X)
AMPP_ECOLI
[Raw transfer]

-

17 PsiBlast_PDB 98.7849%-104 - C2 -2BWU - AMPP_ECOLI -
4 PsiBlast_PDB 98.3349%-102 - C2 -1WLR 3.0 AMPP_ECOLI
11 PsiBlast_PDB 98.0749%-103 - C2 -1WL9 - AMPP_ECOLI -
28 PsiBlast_CBE 98.0349%-104 - C2 -1W2M - AMPP_ECOLI -
3 PsiBlast_PDB 98.0349%-103 - C2 -1WL6 2.7 AMPP_ECOLI
35 PsiBlast_CBE 98.0249%-103 - C2 -2BWV - AMPP_ECOLI -
34 PsiBlast_CBE 97.9349%-101 - C2 -2V3Y 3.7 AMPP_ECOLI
29 PsiBlast_CBE 97.8949%-104 - C2 -1W2M - AMPP_ECOLI -
9 PsiBlast_PDB 97.8549%-103 - C2 -2BH3 2.4 AMPP_ECOLI
25 PsiBlast_CBE 97.8049%-105 - C2 -1M35 - AMPP_ECOLI -
6 PsiBlast_PDB 97.7849%-103 - C2 -2BHB 3.3 AMPP_ECOLI
26 PsiBlast_CBE 97.7749%-102 - C2 -2BWX - AMPP_ECOLI -
22 PsiBlast_CBE 97.7649%-104 - C2 -1M35 - AMPP_ECOLI -
19 PsiBlast_PDB 97.6649%-102 - C2 -2BWS - AMPP_ECOLI -
27 PsiBlast_CBE 97.6049%-103 - C2 -1W2M - AMPP_ECOLI -
14 PsiBlast_PDB 97.5849%-102 - C2 -2V3Z 6.3 AMPP_ECOLI
24 PsiBlast_CBE 97.5649%-104 - C2 -1M35 - AMPP_ECOLI -
20 PsiBlast_PDB 97.4549%-102 - C2 -2V3X 2.7 AMPP_ECOLI
12 PsiBlast_PDB 97.3549%-102 - C2 -1W2M - AMPP_ECOLI -
8 PsiBlast_PDB 97.3249%-102 - C2 -2BHD 3.9 AMPP_ECOLI
5 PsiBlast_PDB 97.2949%-102 - C2 -2BHA 5.6 AMPP_ECOLI
16 PsiBlast_PDB 97.2349%-104 - C2 -2BWT 2.5 AMPP_ECOLI
64 HHSearch 96.8549%-102 - C2 -2V3Z 6.3 AMPP_ECOLI
10 PsiBlast_PDB 96.8349%-104 - C2 -2BN7 2.4 AMPP_ECOLI
2 PsiBlast_PDB 96.6849%-104 - C2 -1N51 6.6 AMPP_ECOLI
33 PsiBlast_CBE 96.1949%-102 - C2 -4PV4 2.4 ?
18 PsiBlast_PDB 96.1049%-104 - C2 -2BWW 2.9 AMPP_ECOLI
32 PsiBlast_CBE 96.0849%-103 * C2 *4PV4 2.9 ?