@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA5288: (2016-03-06 )
MKLVTAIIKPFKLDDVRESLSEIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKIDVAIADDQLDRVIEAITKAANTGKIGDGKIFVVNLEQAIRIRTGETDTDAI

Atome Classification :

(73 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_C_8(1UL3)
GLNB_SYNY3
[Raw transfer]




ATP_B_9(3MHY)
?
[Raw transfer]




ATP_C_16(2XZW)
GLNB_SYNE7
[Raw transfer]




ATP_C_15(3MHY)
?
[Raw transfer]




ADP_C_9(4CNZ)
?
[Raw transfer]




ADP_D_10(4CNZ)
?
[Raw transfer]




ATP_B_10(2XUL)
GLNB_SYNE7
[Raw transfer]




ADP_F_12(4CNZ)
?
[Raw transfer]




ADP_B_8(4CNZ)
?
[Raw transfer]




ATP_D_16(2XUL)
GLNB_SYNE7
[Raw transfer]




ADP_A_3(4CO1)
?
[Raw transfer]




ATP_G_24(2XZW)
GLNB_SYNE7
[Raw transfer]




ADP_A_3(4CO2)
?
[Raw transfer]




ATP_H_25(2XZW)
GLNB_SYNE7
[Raw transfer]




ATP_E_19(2XUL)
GLNB_SYNE7
[Raw transfer]




ATP_F_21(2XZW)
GLNB_SYNE7
[Raw transfer]




ATP_A_4(2J9E)
Y059_METJA
[Raw transfer]




ATP_A_7(2XUL)
GLNB_SYNE7
[Raw transfer]




ATP_D_19(2XZW)
GLNB_SYNE7
[Raw transfer]




ATP_A_2(4AFF)
GLNB_SYNE7
[Raw transfer]




ADP_E_11(4CNZ)
?
[Raw transfer]




ATP_B_5(3LF0)
GLNB_MYCTU
[Raw transfer]




ATP_B_13(2XZW)
GLNB_SYNE7
[Raw transfer]




ATP_A_4(3LF0)
GLNB_MYCTU
[Raw transfer]




ADP_B_8(3TA1)
?
[Raw transfer]




ADP_F_11(4C3K)
GLNB_SYNE7
[Raw transfer]




ATP_C_6(3LF0)
GLNB_MYCTU
[Raw transfer]




ADP_B_4(4CO0)
?
[Raw transfer]




ADP_C_8(4C3K)
GLNB_SYNE7
[Raw transfer]




ADP_B_11(2NS1)
GLNK_ECOLI
[Raw transfer]




ATP_D_4(2GNK)
GLNK_ECOLI
[Raw transfer]




ADP_B_11(2NS1)
GLNK_ECOLI
[Raw transfer]




ADP_A_3(3N5B)
?
[Raw transfer]




ADP_A_7(3TA1)
?
[Raw transfer]




ATP_B_8(2J9E)
Y059_METJA
[Raw transfer]




ADP_D_9(4C3K)
GLNB_SYNE7
[Raw transfer]




ATP_C_10(2J9E)
Y059_METJA
[Raw transfer]




ADP_B_5(4CO2)
?
[Raw transfer]




ATP_D_4(2GNK)
GLNK_ECOLI
[Raw transfer]




ADP_D_10(3TA1)
?
[Raw transfer]




ATP_B_9(3TA2)
?
[Raw transfer]




ADP_B_4(4CO1)
?
[Raw transfer]




ADP_F_12(3TA1)
?
[Raw transfer]




ATP_A_4(2J9C)
Y059_METJA
[Raw transfer]




ATP_A_4(3NCQ)
?
[Raw transfer]




ATP_D_10(3TA0)
?
[Raw transfer]




ADP_C_9(3TA1)
?
[Raw transfer]




ADP_E_11(3TA1)
?
[Raw transfer]




ATP_E_20(2XZW)
GLNB_SYNE7
[Raw transfer]




ATP_C_9(3TA0)
?
[Raw transfer]




ATP_F_12(3TA0)
?
[Raw transfer]




ATP_A_3(2EG2)
GLNB_AQUAE
[Raw transfer]




ATP_C_13(3TA2)
?
[Raw transfer]




ATP_A_3(2EG2)
GLNB_AQUAE
[Raw transfer]




ATP_A_7(3TA0)
?
[Raw transfer]




ATP_E_11(3TA0)
?
[Raw transfer]




ATP_B_8(3TA0)
?
[Raw transfer]




ATP_B_7(4CO4)
?
[Raw transfer]




ATP_A_4(4CO4)
?
[Raw transfer]




ATP_A_6(3TA2)
?
[Raw transfer]




ADP_A_3(4CO0)
?
[Raw transfer]




AMP_C_9(4CO4)
?
[Raw transfer]




GOL_A_7(1UL3)
GLNB_SYNY3
[Raw transfer]




ADP_E_10(4C3K)
GLNB_SYNE7
[Raw transfer]




FLC_C_7(3T9Z)
?
[Raw transfer]




AKG_B_10(3MHY)
?
[Raw transfer]




AKG_C_16(3MHY)
?
[Raw transfer]




TLA_A_2(4CO5)
?
[Raw transfer]




FLC_D_4(2O66)
GLNB_ARATH
[Raw transfer]




8 PsiBlast_PDB 93.1772%-126 - C4 -4CO2 6.1 ?
37 PsiBlast_CBE 92.2272%-128 - C4 -3MHY 7.0 ?
7 PsiBlast_PDB 92.2272%-127 - C4 -4CO1 6.0 ?
6 PsiBlast_PDB 92.0772%-136 - C4 -4CO0 5.0 ?
29 PsiBlast_CBE 91.9372%-124 - C4 -4CO2 5.5 ?
30 PsiBlast_CBE 91.6272%-123 - C4 -4CO1 5.1 ?
22 PsiBlast_CBE 91.4778%-119 - C4 -2NUU - GLNK_ECOLI -
38 PsiBlast_CBE 91.3972%-127 - C4 -3MHY 7.6 ?
106 HHSearch 90.9878%-120 - C4 -2NS1 6.0 GLNK_ECOLI
11 PsiBlast_PDB 90.7177%-120 - C4 -2NS1 6.0 GLNK_ECOLI
16 PsiBlast_PDB 90.4968%-120 - C4 -2PII - GLNB_ECOLI -
25 PsiBlast_CBE 90.4678%-117 - C4 -2NUU - GLNK_ECOLI -
2 PsiBlast_PDB 90.3678%-117 - C4 -2NUU - GLNK_ECOLI -
33 PsiBlast_CBE 90.3372%-115 - C4 -4CNZ 6.7 ?
21 PsiBlast_CBE 89.8678%-117 - C4 -2NUU - GLNK_ECOLI -
26 PsiBlast_CBE 89.7678%-114 - C4 -1GNK - GLNK_ECOLI -
36 PsiBlast_CBE 89.6972%-127 - C4 -4CNZ 5.8 ?
34 PsiBlast_CBE 89.5772%-133 - C4 -4CNZ 6.0 ?
31 PsiBlast_CBE 89.3772%-134 - C4 -4CO0 4.7 ?
23 PsiBlast_CBE 89.3478%-115 - C4 -2NUU - GLNK_ECOLI -
35 PsiBlast_CBE 88.8572%-129 - C4 -4CNZ 6.7 ?
32 PsiBlast_CBE 88.0972%-124 - C4 -4CNZ 6.4 ?
10 PsiBlast_PDB 87.4772%-141 - C4 -4CO5 3.3 ?
43 PsiBlast_CBE 87.0558%-123 - C4 -3LF0 5.8 GLNB_MYCTU
55 PsiBlast_CBE 85.1458%-117 - C4 -2XZW 7.0 GLNB_SYNE7
73 PsiBlast_CBE 85.0558%-131 - C4 -4AFF 7.2 GLNB_SYNE7
20 PsiBlast_PDB 84.1758%-136 - C4 -3LF0 4.7 GLNB_MYCTU
56 PsiBlast_CBE 83.8858%-118 - C4 -2XZW 5.6 GLNB_SYNE7
64 PsiBlast_CBE 83.8758%-127 - C4 -2XUL 7.3 GLNB_SYNE7
60 PsiBlast_CBE 83.7858%-125 - C4 -2XZW 7.8 GLNB_SYNE7
12 PsiBlast_PDB 83.7577%-113 - C4 -2GNK 4.8 GLNK_ECOLI
44 PsiBlast_CBE 83.7258%-117 - C4 -3N5B 5.5 ?
9 PsiBlast_PDB 83.4172%-150 - C4 -4CO4 4.6 ?
28 PsiBlast_CBE 83.3772%-137 - C4 -4CO4 4.5 ?
27 PsiBlast_CBE 83.0872%-144 - C4 -4CO4 4.0 ?
61 PsiBlast_CBE 82.4558%-119 - C4 -2XZW 7.6 GLNB_SYNE7
124 Fugue 82.3375%-114 - C4 -2GNK 4.0 GLNK_ECOLI
51 PsiBlast_CBE 82.3158%-131 - C4 -4C3K 5.1 GLNB_SYNE7
57 PsiBlast_CBE 81.9958%-124 - C4 -2XZW 7.9 GLNB_SYNE7
42 PsiBlast_CBE 81.8858%-134 - C4 -3LF0 5.7 GLNB_MYCTU
104 HHSearch 81.8263%-149 - C4 -2EG2 4.9 GLNB_AQUAE
18 PsiBlast_PDB 81.8263%-149 - C4 -2EG2 4.9 GLNB_AQUAE
65 PsiBlast_CBE 81.7258%-124 - C4 -2XUL 7.2 GLNB_SYNE7
62 PsiBlast_CBE 81.3958%-123 - C4 -2XUL 7.6 GLNB_SYNE7
59 PsiBlast_CBE 81.2958%-123 - C4 -2XZW 6.7 GLNB_SYNE7
83 PsiBlast_CBE 81.2550%-118 - C4 -3TA1 6.1 ?
48 PsiBlast_CBE 81.2358%-125 - C4 -4C3K 4.5 GLNB_SYNE7
85 PsiBlast_CBE 81.1050%-123 - C4 -3TA1 5.6 ?
113 HHSearch 80.8750%-115 - C4 -2J9C 6.4 Y059_METJA
63 PsiBlast_CBE 80.8558%-122 - C4 -2XUL 7.0 GLNB_SYNE7
95 PsiBlast_CBE 80.4250%-131 - C4 -3T9Z 3.4 ?
50 PsiBlast_CBE 80.3158%-135 - C4 -4C3K 4.6 GLNB_SYNE7
97 PsiBlast_CBE 80.0850%-113 - C4 -2J9E 6.4 Y059_METJA
99 PsiBlast_CBE 79.9050%-118 - C4 -2J9E 5.9 Y059_METJA
79 PsiBlast_CBE 79.8450%-116 - C4 -3TA2 6.2 ?
110 HHSearch 79.6544%-116 - C4 -3NCQ 5.3 ?
80 PsiBlast_CBE 79.3750%-119 - C4 -3TA2 6.6 ?
77 PsiBlast_CBE 78.6856%-123 - C4 -1UL3 3.1 GLNB_SYNY3
89 PsiBlast_CBE 78.5550%-135 - C4 -3TA0 5.0 ?
87 PsiBlast_CBE 78.3250%-116 - C4 -3TA1 6.2 ?
92 PsiBlast_CBE 78.2550%-139 - C4 -3TA0 5.0 ?
84 PsiBlast_CBE 78.0550%-121 - C4 -3TA1 6.3 ?
98 PsiBlast_CBE 78.0350%-116 - C4 -2J9E 5.1 Y059_METJA
81 PsiBlast_CBE 78.0350%-119 - C4 -3TA2 6.4 ?
86 PsiBlast_CBE 77.8750%-116 - C4 -3TA1 5.6 ?
58 PsiBlast_CBE 77.8758%-126 - C4 -2XZW 4.9 GLNB_SYNE7
49 PsiBlast_CBE 77.8258%-134 - C4 -4C3K 4.5 GLNB_SYNE7
82 PsiBlast_CBE 77.1650%-113 - C4 -3TA1 5.8 ?
93 PsiBlast_CBE 76.7250%-131 - C4 -3TA0 4.7 ?
91 PsiBlast_CBE 76.1050%-133 - C4 -3TA0 4.7 ?
90 PsiBlast_CBE 75.8250%-134 - C4 -3TA0 5.4 ?
88 PsiBlast_CBE 74.6550%-129 - C4 -3TA0 4.6 ?
108 HHSearch 74.6143%-138 - C4 -2O66 3.4 GLNB_ARATH