@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA5320: (2016-03-06 )
MQRLYRKRIVLGVGGGIAAYKSAELVRRLRDQGAEVRVVMTQGGREFITPLTLQALSGHPVHTDLLDPAAEAAMGHIELARWADLVLIAPATADLMARLVQGVANDLLTTLVLATDAQIALAPAMNQAMWRDTATQANAELLRQRGFHLFGPAAGSQACGDVGLGRMLEAEELAQRAADCFQRQALTGVHVLITAGPTQENIDPVRYITNHSSGKMGFALAEAAVEAGARVTLVTGPVHLPTPDRVQRVDVVSARDMLAACEAAMPCDLLIASAAVADYRPEVVAAHKLKKDPTSGEGLLLQLVRNPDILATLAQREDRPFSVGFAAETENLLDYAARKLKDKNLDLIVANDVANPSIGFNSDENAITVIDRDLHPSTFAQTSKGKIARQLVAFIADRLNQQ

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PMT_E_5(1U7Z)
COABC_ECOLI
[Raw transfer]



PMT_E_5(1U7Z)
COABC_ECOLI
[Raw transfer]



PMT_E_5(1U7Z)
COABC_ECOLI
[Raw transfer]



PMT_F_6(1U7Z)
COABC_ECOLI
[Raw transfer]



PMT_G_7(1U7Z)
COABC_ECOLI
[Raw transfer]



C5P_K_11(1U80)
COABC_ECOLI
[Raw transfer]



CTP_A_3(4QJI)
?
[Raw transfer]



C5P_J_10(1U80)
COABC_ECOLI
[Raw transfer]



C5P_I_9(1U80)
COABC_ECOLI
[Raw transfer]



CTP_B_5(4QJI)
?
[Raw transfer]
48 Fugue 91.4148% -98 - C1 -1U7Z 11.0 COABC_ECOLI
18 PsiBlast_CBE 90.4838%-108 - C1 -4QJI 5.2 ?
34 HHSearch 90.2050% -98 - C1 -1U7Z 11.0 COABC_ECOLI
4 PsiBlast_PDB 87.9038%-111 - C1 -4QJI 5.2 ?
17 PsiBlast_CBE 83.5955% -99 - C1 -1U7Z 9.2 COABC_ECOLI
2 PsiBlast_PDB 82.7055%-100 - C1 -1U7Z 10.6 COABC_ECOLI
14 PsiBlast_CBE 82.3455%-105 - C1 -1U80 4.6 COABC_ECOLI
16 PsiBlast_CBE 82.0555% -99 - C1 -1U7Z 10.3 COABC_ECOLI
15 PsiBlast_CBE 81.4755%-103 - C1 -1U80 3.7 COABC_ECOLI
5 PsiBlast_PDB 80.7032%-114 - C1 -1E20 - HAL3A_ARATH -
3 PsiBlast_PDB 80.1755%-102 - C1 -1U80 4.1 COABC_ECOLI
1 PsiBlast_PDB 80.0755%-112 - C1 -1U7U - COABC_ECOLI -
7 PsiBlast_PDB 78.7731%-118 - C1 -1MVL - HAL3A_ARATH -
50 Fugue 76.8130%-107 - C1 -1E20 - HAL3A_ARATH -
8 PsiBlast_PDB 76.0031%-109 - C1 -1MVN - HAL3A_ARATH -
25 HHSearch 74.9729% -97 * C1 *2GK4 - ? -
49 Fugue 74.2931%-104 - C1 -1E20 - HAL3A_ARATH -
26 HHSearch 74.2130%-110 - C1 -1MVL - HAL3A_ARATH -
19 PsiBlast_CBE 72.6131%-121 - C1 -1QZU - COAC_HUMAN -
21 PsiBlast_CBE 72.2731%-121 - C1 -1QZU - COAC_HUMAN -