@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA5334: (2016-03-06 )
MNRPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLEDSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALAE

Atome Classification :

(32 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

UDP_A_3(2PNZ)
RRP41_PYRAB
[Raw transfer]



CDP_A_3(2PO2)
RRP41_PYRAB
[Raw transfer]



CHAIN_C_1(2PO1)
RRP41_PYRAB
[Raw transfer]
-
CHAIN_C_1(2PO1)
RRP41_PYRAB
[Raw transfer]
-
NACID_Z_12(3M7N)
RRP41_ARCFU
[Raw transfer]
-
CHAIN_C_3(2JEA)
RRP41_SULSO
[Raw transfer]
-
NACID_Z_12(3M85)
RRP41_ARCFU
[Raw transfer]
-
NACID_X_10(3M85)
RRP41_ARCFU
[Raw transfer]
-
NACID_Y_11(3M7N)
RRP41_ARCFU
[Raw transfer]
-
NACID_Y_11(3M7N)
RRP41_ARCFU
[Raw transfer]
-
NACID_Y_11(3M85)
RRP41_ARCFU
[Raw transfer]
-
NACID_X_10(3M7N)
RRP41_ARCFU
[Raw transfer]
-
66 HHSearch 97.22100% -97 - C1 -1R6L - RNPH_PSEAE -
1 PsiBlast_PDB 96.12100% -98 - C1 -1R6M - RNPH_PSEAE -
2 PsiBlast_PDB 95.6197% -97 - C1 -1R6L - RNPH_PSEAE -
5 PsiBlast_PDB 86.5256% -94 - C1 -3DD6 - RNPH_BACAN -
67 HHSearch 85.6655% -91 - C1 -3DD6 - RNPH_BACAN -
23 PsiBlast_CBE 85.1056% -96 - C1 -1OYR - RNPH_BACSU -
25 PsiBlast_CBE 84.9956% -94 - C1 -1OYR - RNPH_BACSU -
22 PsiBlast_CBE 84.8956% -95 - C1 -1OYR - RNPH_BACSU -
4 PsiBlast_PDB 84.6656% -94 - C1 -1OYR - RNPH_BACSU -
24 PsiBlast_CBE 84.4956% -94 - C1 -1OYR - RNPH_BACSU -
35 PsiBlast_CBE 84.1256% -93 - C1 -3B4T - RNPH_MYCTU -
21 PsiBlast_CBE 83.9156% -94 - C1 -1OYR - RNPH_BACSU -
26 PsiBlast_CBE 83.6756%-102 - C1 -1OYP - RNPH_BACSU -
34 PsiBlast_CBE 83.3256% -96 - C1 -3B4T - RNPH_MYCTU -
70 HHSearch 83.2557% -91 - C1 -3B4T - RNPH_MYCTU -
29 PsiBlast_CBE 83.1656%-101 - C1 -1OYP - RNPH_BACSU -
11 PsiBlast_PDB 83.0856% -91 - C1 -3B4T - RNPH_MYCTU -
30 PsiBlast_CBE 83.0356%-102 - C1 -1OYP - RNPH_BACSU -
3 PsiBlast_PDB 83.0156%-102 - C1 -1OYP - RNPH_BACSU -
27 PsiBlast_CBE 82.6556%-101 - C1 -1OYP - RNPH_BACSU -
20 PsiBlast_PDB 68.0630% -90 - C1 -2JEA 6.2 RRP41_SULSO
80 HHSearch 67.9333% -88 - C1 -3M7N 3.7 RRP41_ARCFU
72 HHSearch 67.0033% -86 - C1 -2PO1 5.5 RRP41_PYRAB
39 PsiBlast_CBE 66.5732% -79 - C1 -3M7N 3.0 RRP41_ARCFU
36 PsiBlast_CBE 66.5532% -81 - C1 -3M85 3.5 RRP41_ARCFU
41 PsiBlast_CBE 65.3532% -79 - C1 -3M7N 3.9 RRP41_ARCFU
40 PsiBlast_CBE 65.3032% -75 - C1 -3M7N 4.4 RRP41_ARCFU
38 PsiBlast_CBE 64.7732% -79 - C1 -3M85 2.7 RRP41_ARCFU
45 PsiBlast_CBE 63.8831% -88 - C1 -2PNZ 4.8 RRP41_PYRAB
43 PsiBlast_CBE 63.8331% -90 - C1 -2PO1 5.4 RRP41_PYRAB
37 PsiBlast_CBE 63.8332% -80 - C1 -3M85 2.8 RRP41_ARCFU
42 PsiBlast_CBE 63.5431% -89 - C1 -2PO2 4.3 RRP41_PYRAB