@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA5415: (2016-03-07 )
MFSKHDQIRGYDDELLAAMDAEEARQEDHLELIASENYTSKRVMQAQGSGLTNKYAEGYPGKRYYGGCEHVDKVERLAIDRARQLFGADYANVQPHSGSSANAAVYLALLNAGDTILGMSLAHGGHLTHGAKVSSSGKLYNAVQYGLDTATGLIDYDEVERLAVEHKPKMIVAGFSAYSKTLDFPRFRAIADKVGALLFVDMAHVAGLVAAGLYPNPIPFADVVTTTTHKTLRGPRGGLILARANEEIEKKLNSAVFPGAQGGPLMHVIAAKAVCFKEALEPGFKDYQAQVIRNAKAMAEVFIGRGYDVVSGGTDNHLMLISLVRQGLTGKEADAALGRVGITVNKNAVPNDPQSPFVTSGIRIGTPAITTRGLQEAQSRELAGWICDILDHLGDADVEAKVATQVAGLCADFPVYR

Atome Classification :

(83 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

2BO_A_3(4WXG)
GLYA_STRT1
[Raw transfer]



2BO_C_6(4WXG)
GLYA_STRT1
[Raw transfer]



PLG_C_6(4WXF)
GLYA_STRT1
[Raw transfer]



PLG_A_3(4WXF)
GLYA_STRT1
[Raw transfer]



FON_H_8(1KL2)
?
[Raw transfer]



ALO_A_3(2W7G)
?
[Raw transfer]



PLG_A_4(1RVY)
GLYC_RABIT
[Raw transfer]



GLY_A_2(2W7H)
?
[Raw transfer]



GOL_B_5(4PVF)
GLYM_HUMAN
[Raw transfer]



GOL_A_3(4PVF)
GLYM_HUMAN
[Raw transfer]



GLY_A_2(2VGT)
?
[Raw transfer]



PLP_C_3(1YJS)
?
[Raw transfer]



ALO_A_3(2VMX)
?
[Raw transfer]



PLP_A_3(2W7K)
?
[Raw transfer]



PLP_A_3(2VGU)
?
[Raw transfer]



PLP_A_3(2VIB)
?
[Raw transfer]



PLP_A_3(2VGV)
?
[Raw transfer]



PLP_A_3(2VMO)
?
[Raw transfer]



PLP_A_2(2W7L)
?
[Raw transfer]



PLP_A_2(2W7G)
?
[Raw transfer]



PLP_A_3(2VMT)
?
[Raw transfer]



PLP_A_3(2W7M)
?
[Raw transfer]



PLP_A_3(2VIA)
?
[Raw transfer]



PLP_A_3(2VMW)
?
[Raw transfer]



PLP_A_3(2VMQ)
?
[Raw transfer]



PLP_A_3(2VI9)
?
[Raw transfer]



PLP_A_3(2VMP)
?
[Raw transfer]



PLP_C_3(1KL1)
?
[Raw transfer]



PLP_A_3(2VGT)
?
[Raw transfer]



PLP_C_3(1KKP)
?
[Raw transfer]



PLP_A_3(2VMU)
?
[Raw transfer]



PLP_A_2(2VMX)
?
[Raw transfer]



PLP_A_3(2W7J)
?
[Raw transfer]



PLP_C_3(1YJZ)
?
[Raw transfer]



PLP_A_2(2VMR)
?
[Raw transfer]



PLP_A_3(2W7H)
?
[Raw transfer]



PLP_A_9(1RV4)
GLYC_RABIT
[Raw transfer]



PLP_A_6(1RV3)
GLYC_RABIT
[Raw transfer]



PLP_A_2(2VI8)
?
[Raw transfer]



PLP_A_2(2VGS)
?
[Raw transfer]



PLP_A_3(2W7E)
?
[Raw transfer]



PLP_A_5(2DKJ)
GLYA_THET8
[Raw transfer]



PLP_A_2(2VMV)
?
[Raw transfer]



PLP_B_9(1RVU)
GLYC_RABIT
[Raw transfer]



PLP_B_4(1CJ0)
GLYC_RABIT
[Raw transfer]



PLP_A_3(2VMS)
?
[Raw transfer]



PLP_A_2(2VI8)
?
[Raw transfer]



PLP_B_7(1RV3)
GLYC_RABIT
[Raw transfer]



PLP_A_2(2VMN)
?
[Raw transfer]



PLP_A_3(1CJ0)
GLYC_RABIT
[Raw transfer]



PLP_A_3(2W7F)
?
[Raw transfer]



PLP_B_6(2DKJ)
GLYA_THET8
[Raw transfer]



PLP_A_3(2VMZ)
?
[Raw transfer]



PLP_A_3(1KKJ)
?
[Raw transfer]



PLP_A_7(1RVU)
GLYC_RABIT
[Raw transfer]



PLP_A_2(2W7I)
?
[Raw transfer]



PLP_A_2(2W7D)
?
[Raw transfer]



PLP_B_11(1RV4)
GLYC_RABIT
[Raw transfer]



PLP_B_5(1RVY)
GLYC_RABIT
[Raw transfer]



PLP_A_5(2DKJ)
GLYA_THET8
[Raw transfer]



PLP_A_2(1BJ4)
GLYC_HUMAN
[Raw transfer]



FON_G_7(1KL2)
?
[Raw transfer]



FFO_B_8(2VMY)
?
[Raw transfer]



PLP_A_3(2VGW)
?
[Raw transfer]



PLP_C_3(1YJY)
?
[Raw transfer]



FFO_A_6(2VMY)
?
[Raw transfer]



PLP_A_2(3G8M)
GLYA_ECOLI
[Raw transfer]
124 Fugue 92.5873% -95 - C1 -1DFO - GLYA_ECOLI -
22 PsiBlast_CBE 92.4371% -93 - C1 -1DFO - GLYA_ECOLI -
23 PsiBlast_CBE 91.3671% -92 - C1 -1DFO - GLYA_ECOLI -
25 PsiBlast_CBE 91.0670% -92 - C1 -1EQB - GLYA_ECOLI -
26 PsiBlast_CBE 90.9070% -92 - C1 -1EQB - GLYA_ECOLI -
1 PsiBlast_PDB 90.8871% -92 - C1 -1DFO - GLYA_ECOLI -
24 PsiBlast_CBE 90.5771% -91 - C1 -1DFO - GLYA_ECOLI -
2 PsiBlast_PDB 90.2570% -92 - C1 -1EQB - GLYA_ECOLI -
27 PsiBlast_CBE 90.0570% -93 - C1 -1EQB - GLYA_ECOLI -
30 PsiBlast_CBE 89.1662% -91 - C1 -4N0W - ? -
21 PsiBlast_CBE 88.8071%-104 - C1 -4P3M - GLYA_PSYIN -
29 PsiBlast_CBE 88.6062% -91 - C1 -4N0W - ? -
35 PsiBlast_CBE 88.4262% -91 - C1 -4OT8 - ? -
5 PsiBlast_PDB 88.3062% -91 - C1 -4N0W - ? -
6 PsiBlast_PDB 88.2762% -90 - C1 -4OT8 - ? -
31 PsiBlast_CBE 88.2462% -90 - C1 -4OTL - ? -
36 PsiBlast_CBE 88.2262% -90 - C1 -4OT8 - ? -
34 PsiBlast_CBE 88.0562% -91 - C1 -4OT8 - ? -
7 PsiBlast_PDB 87.8762% -92 - C1 -4OTL - ? -
104 HHSearch 87.7671%-108 - C1 -3GBX - GLYA_SALTY -
3 PsiBlast_PDB 86.6470% -92 - C1 -3G8M 4.3 GLYA_ECOLI
77 PsiBlast_CBE 85.0258% -87 - C1 -4WXF 5.5 GLYA_STRT1
19 PsiBlast_PDB 84.9259% -88 - C1 -2W7D 4.5 ?
76 PsiBlast_CBE 84.7558% -89 - C1 -4WXG 6.1 GLYA_STRT1
70 PsiBlast_CBE 84.3559% -87 - C1 -2VMY 4.2 ?
15 PsiBlast_PDB 84.2459% -88 - C1 -2VI8 4.4 ?
41 PsiBlast_CBE 84.1459% -87 - C1 -2W7H 2.9 ?
49 PsiBlast_CBE 84.1059% -89 - C1 -1YJZ 3.8 ?
75 PsiBlast_CBE 84.0158% -88 - C1 -4WXG 6.5 GLYA_STRT1
66 PsiBlast_CBE 83.9059% -88 - C1 -2VMR 4.4 ?
50 PsiBlast_CBE 83.8059% -88 - C1 -1YJY 4.2 ?
43 PsiBlast_CBE 83.6859% -86 - C1 -2W7F 3.3 ?
52 PsiBlast_CBE 83.6459% -87 - C1 -2VMP 4.3 ?
72 PsiBlast_CBE 83.5959% -87 - C1 -2VMX 4.1 ?
47 PsiBlast_CBE 83.5459% -88 - C1 -2VGT 4.0 ?
48 PsiBlast_CBE 83.5259% -87 - C1 -2VGS 4.3 ?
58 PsiBlast_CBE 83.4859% -88 - C1 -2W7M 4.2 ?
42 PsiBlast_CBE 83.4259% -86 - C1 -2W7G 3.4 ?
16 PsiBlast_PDB 83.4059% -87 - C1 -2VIB 3.9 ?
78 PsiBlast_CBE 83.3858% -89 - C1 -4WXF 5.8 GLYA_STRT1
51 PsiBlast_CBE 83.3159% -86 - C1 -2VMQ 4.3 ?
46 PsiBlast_CBE 83.2359% -86 - C1 -2VGU 4.3 ?
20 PsiBlast_PDB 83.1759% -86 - C1 -2W7E 4.3 ?
53 PsiBlast_CBE 83.0959% -87 - C1 -2VMO 3.7 ?
17 PsiBlast_PDB 83.0759% -87 - C1 -2VIA 4.0 ?
18 PsiBlast_PDB 83.0459% -86 - C1 -2VI9 3.9 ?
44 PsiBlast_CBE 82.9159% -85 - C1 -2VGW 4.1 ?
11 PsiBlast_PDB 82.8559% -86 - C1 -1KKP 4.5 ?
61 PsiBlast_CBE 82.8459% -86 - C1 -2W7J 4.3 ?
73 PsiBlast_CBE 82.8159% -85 - C1 -2VMW 4.4 ?
64 PsiBlast_CBE 82.8159% -86 - C1 -2VMT 4.6 ?
69 PsiBlast_CBE 82.8059% -88 - C1 -2VMZ 3.0 ?
54 PsiBlast_CBE 82.8059% -86 - C1 -2VMN 4.5 ?
14 PsiBlast_PDB 82.6859% -87 - C1 -1YJS 4.4 ?
12 PsiBlast_PDB 82.6659% -87 - C1 -1KL1 4.5 ?
74 PsiBlast_CBE 82.6159% -87 - C1 -2VMV 4.3 ?
106 HHSearch 82.4357% -87 - C1 -2DKJ 3.2 GLYA_THET8
65 PsiBlast_CBE 82.4359% -87 - C1 -2VMS 3.1 ?
60 PsiBlast_CBE 82.4259% -88 - C1 -2W7K 4.1 ?
10 PsiBlast_PDB 82.4259% -87 - C1 -1KKJ 3.2 ?
63 PsiBlast_CBE 82.4059% -85 - C1 -2VMU 4.1 ?
45 PsiBlast_CBE 82.3759% -88 - C1 -2VGV 4.3 ?
62 PsiBlast_CBE 82.2959% -87 - C1 -2W7I 3.0 ?
105 HHSearch 82.0060% -87 * C1 *2VI8 4.4 ?
13 PsiBlast_PDB 81.9759% -86 - C1 -1KL2 5.7 ?
59 PsiBlast_CBE 81.9359% -87 - C1 -2W7L 4.4 ?
71 PsiBlast_CBE 81.8059% -88 - C1 -2VMY 4.1 ?
40 PsiBlast_CBE 81.7259% -85 - C1 -1KL2 5.1 ?
68 PsiBlast_CBE 75.8365% -82 - C1 -2DKJ 3.2 GLYA_THET8
101 HHSearch 75.8246% -84 - C1 -1RV3 2.8 GLYC_RABIT
123 Fugue 73.5845% -82 - C1 -1BJ4 2.7 GLYC_HUMAN
88 PsiBlast_CBE 72.9246% -86 - C1 -1CJ0 4.7 GLYC_RABIT
92 PsiBlast_CBE 72.8146% -83 - C1 -1RVU 3.3 GLYC_RABIT
67 PsiBlast_CBE 72.6565% -81 - C1 -2DKJ 3.1 GLYA_THET8
90 PsiBlast_CBE 72.3746% -82 - C1 -1RVY 3.6 GLYC_RABIT
84 PsiBlast_CBE 71.8746% -84 - C1 -4PVF 3.0 GLYM_HUMAN
93 PsiBlast_CBE 71.6246% -82 - C1 -1RVU 2.5 GLYC_RABIT
83 PsiBlast_CBE 70.9046% -86 - C1 -4PVF 3.3 GLYM_HUMAN
91 PsiBlast_CBE 70.8146% -83 - C1 -1RVY 2.7 GLYC_RABIT
100 PsiBlast_CBE 70.5846% -81 - C1 -1RV3 3.7 GLYC_RABIT
89 PsiBlast_CBE 70.3646% -84 - C1 -1CJ0 4.2 GLYC_RABIT
98 PsiBlast_CBE 69.8246% -82 - C1 -1RV4 3.8 GLYC_RABIT
99 PsiBlast_CBE 68.7146% -81 - C1 -1RV4 3.5 GLYC_RABIT