@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA5443: (2016-03-07 )
MNDDLSLLLNSLNDPQRQAVAAPLGRQLVLAGAGSGKTRVLVHRIAWLIQVEHASPYSILSVTFTNKAAAEMRHRIEQLLGINPAGMWVGTFHGLAHRLLRAHWREAGLSENFQILDSDDQQRLVKRVIRELGLDEQRWPARQAQWFINGQKDEGLRPQHIQPGGDLFLATMLKIYEAYEAACARAGVIDFSELLLRALDLWRDHPGVLEHYQRRFRHILVDEFQDTNAVQYAWLRILAKGGDSLMVVGDDDQSIYGWRGARIENIQQFSDDFADAEVIRLEQNYRSTASILKAANALIANNQGRLGKELWTDGEDGESLSLYAAFNEHDEARYVVESIESALKGGLARSEIAILYRSNAQSRVLEEALLREKIPYRIYGGQRFFERAEIKNAMAYLRLLDGRGNDAALERVVNVPARGIGEKTVESIREFARGNDVSMWEAIRLMIANKVLPGRAASALTGFVELIENLSAKVMDMPLHLMTQTVIEQSGLISYHKEEKGEKGQARVENLEELVSAARAFENSEEEEDLTPLQAFLSHASLEAGETQADAHEDSVQLMTLHSAKGLEFPLVFLVGMEEGLFPHKMSLEESGRLEEERRLAYVGVTRAMQRLVLTYAETRRLYGSETYNKVSRFIREIPPALIQEVRLSNTVSRPYGGTSRSAGGNLFSGAGVPETPFSLGQRVRHALFGEGTILNFEGAGAQARVQVNFESEGSKWLMLGYAKLEAL

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_E_3(2IS1)
UVRD_ECOLI
[Raw transfer]
-
CHAIN_K_5(4C30)
?
[Raw transfer]
-
NACID_D_2(2PJR)
?
[Raw transfer]
-
CHAIN_X_7(4C30)
?
[Raw transfer]
-
NACID_Y_1(3PJR)
?
[Raw transfer]
-
NACID_C_1(2PJR)
?
[Raw transfer]
-
NACID_D_2(2IS6)
UVRD_ECOLI
[Raw transfer]
-
NACID_D_2(2PJR)
?
[Raw transfer]
-
NACID_C_1(2PJR)
?
[Raw transfer]
-
NACID_C_1(2IS1)
UVRD_ECOLI
[Raw transfer]
-
NACID_C_1(1UAA)
REP_ECOLI
[Raw transfer]
-
NACID_C_1(1UAA)
REP_ECOLI
[Raw transfer]
-
CHAIN_M_5(4C2T)
?
[Raw transfer]
-
CHAIN_Y_8(4C30)
?
[Raw transfer]
-
CHAIN_L_6(4C30)
?
[Raw transfer]
-
CHAIN_X_3(4C2U)
?
[Raw transfer]
-
NACID_C_1(2IS6)
UVRD_ECOLI
[Raw transfer]
-
CHAIN_Y_4(4C2U)
?
[Raw transfer]
-
3 PsiBlast_PDB 99.4364% -94 - C6 -2IS6 9.9 UVRD_ECOLI
2 PsiBlast_PDB 98.6364% -99 - C6 -2IS2 - UVRD_ECOLI -
1 PsiBlast_PDB 98.6064%-101 - C6 -2IS1 11.0 UVRD_ECOLI
21 PsiBlast_CBE 94.9564%-101 - C6 -2IS1 8.2 UVRD_ECOLI
26 PsiBlast_CBE 86.5641% -80 - C6 -4C2U 12.1 ?
7 PsiBlast_PDB 86.5641% -79 - C6 -4C2U 8.3 ?
25 PsiBlast_CBE 85.9041% -84 - C6 -4C30 8.5 ?
6 PsiBlast_PDB 85.1240% -77 - C6 -4C2T 5.3 ?
22 PsiBlast_CBE 84.9740% -79 - C6 -4C2T - ? -
23 PsiBlast_CBE 84.8441% -85 - C6 -4C30 8.1 ?
8 PsiBlast_PDB 84.0841% -80 - C6 -4C30 6.7 ?
24 PsiBlast_CBE 83.9741% -77 - C6 -4C30 4.1 ?
33 HHSearch 83.7440% -85 - C6 -1PJR - PCRA_GEOSE -
4 PsiBlast_PDB 83.4340% -86 - C6 -3PJR 7.4 ?
5 PsiBlast_PDB 81.6440% -83 - C6 -1PJR - PCRA_GEOSE -
35 HHSearch 81.3538% -85 - C6 -1UAA 8.9 REP_ECOLI
36 HHSearch 81.0428% -89 * C6 *3U4Q - ADDA_BACSU -
10 PsiBlast_PDB 80.4239% -82 - C6 -1UAA 8.1 REP_ECOLI
28 PsiBlast_CBE 79.5539% -81 - C6 -1UAA - REP_ECOLI -
37 HHSearch 72.8422% -93 - C6 -1W36 - RECB_ECOLI -
9 PsiBlast_PDB 72.0139% -81 - C6 -2PJR 12.6 ?
27 PsiBlast_CBE 71.4239% -82 - C6 -2PJR 11.1 ?
31 PsiBlast_CBE 36.7661% -18 - C6 -2PJR 3.4 ?
32 PsiBlast_CBE 35.2061% -12 - C6 -2PJR 4.7 ?