@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA5552: (2016-03-08 )
MSLEIVILAAGQGTRMRSALPKVLHPIAGKPMLGHVIDCARQLQPERIHVVIGHGADLVRERMAADDLNFVLQAEQLGTGHAVAQALPFLSADQVLILYGDVPLIQLDTLQRLLAQVTPDQLSLLTVDMLDPTGYGRIVRDDQGAVQAIVEHKDATPAQRQIGEINTGILAVPGKRLADWLGRLSNDNAQGEYYLTDVIAMAVGDGLVVASAQPLDAMEVQGVNDRMQQAQLERHYQRLRAEELMRQGVTLLDPQRLDVRGEISVGRDVLIDVNVVLEGRVVIEDDVRIGPNCVIRDSVLRRGAVIKANSHLEGAELGEGSDAGPFARLRPGSVLGARAHVGNFVELKNARLGEGSKAGHLSYLGDAELGANCNIGAGTITCNYDGANKFRTELGDDVFIGSNNSLVAPLKIGDGATTAAGSTITHEVPAKNLAFGRARQKNLENWKRPEKIKK

Atome Classification :

(41 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

UD1_A_13(1HM9)
GLMU_STRPN
[Raw transfer]




UD1_B_14(1HM9)
GLMU_STRPN
[Raw transfer]




UD1_A_7(4G3P)
?
[Raw transfer]




UD1_B_13(2OI7)
GLMU_ECOLI
[Raw transfer]




UD1_B_11(1HV9)
GLMU_ECOLI
[Raw transfer]




UD1_A_4(3DJ4)
GLMU_MYCTU
[Raw transfer]




UD1_A_4(1G97)
GLMU_STRPN
[Raw transfer]




UD1_A_13(1HM9)
GLMU_STRPN
[Raw transfer]




UD1_B_14(2OI6)
GLMU_ECOLI
[Raw transfer]




UD1_A_13(1HM9)
GLMU_STRPN
[Raw transfer]




UD1_B_14(2OI5)
GLMU_ECOLI
[Raw transfer]




UD1_A_2(3D8V)
GLMU_MYCTU
[Raw transfer]




1SG_A_12(4KQL)
GLMU_HAEIN
[Raw transfer]




UD1_A_7(4G3Q)
GLMU_MYCTU
[Raw transfer]




1SE_A_12(4KPX)
GLMU_HAEIN
[Raw transfer]




UD1_V_22(1FWY)
GLMU_ECOLI
[Raw transfer]




UD1_A_6(4G87)
GLMU_MYCTU
[Raw transfer]




UD1_A_2(4G3S)
GLMU_MYCTU
[Raw transfer]




UD1_A_10(1HV9)
GLMU_ECOLI
[Raw transfer]




UD1_S_19(1FWY)
GLMU_ECOLI
[Raw transfer]




UD1_A_6(3SPT)
GLMU_MYCTU
[Raw transfer]




UD1_A_10(1HV9)
GLMU_ECOLI
[Raw transfer]




UD1_A_8(3ST8)
GLMU_MYCTU
[Raw transfer]




1S9_A_2(4KNX)
GLMU_HAEIN
[Raw transfer]




1S8_A_2(4KNR)
GLMU_HAEIN
[Raw transfer]




0N5_A_6(4E1K)
GLMU_HAEIN
[Raw transfer]




ATP_A_2(4K6R)
GLMU_MYCTO
[Raw transfer]




1SF_A_2(4KPZ)
GLMU_HAEIN
[Raw transfer]




MES_M_13(1FXJ)
GLMU_ECOLI
[Raw transfer]




MES_M_13(1FXJ)
GLMU_ECOLI
[Raw transfer]




GN1_A_3(4HCQ)
GLMU_MYCTU
[Raw transfer]




POP_A_4(4G3S)
GLMU_MYCTU
[Raw transfer]




GN1_A_2(2QKX)
GLMU_MYCTU
[Raw transfer]




P21_A_2(2VD4)
GLMU_HAEIN
[Raw transfer]




POP_A_2(4G3Q)
GLMU_MYCTU
[Raw transfer]




EDO_Y_25(1FWY)
GLMU_ECOLI
[Raw transfer]




PEG_A_4(2V0H)
GLMU_HAEIN
[Raw transfer]




5 PsiBlast_PDB 95.7456%-115 - C1 -2OI6 - GLMU_ECOLI -
17 PsiBlast_PDB 95.6752%-121 - C1 -4KNX 7.3 GLMU_HAEIN
18 PsiBlast_PDB 95.4452%-121 - C1 -4KPX 6.8 GLMU_HAEIN
20 PsiBlast_PDB 95.1352%-119 - C1 -4KQL 7.9 GLMU_HAEIN
16 PsiBlast_PDB 95.0452%-121 - C1 -4KNR 7.7 GLMU_HAEIN
4 PsiBlast_PDB 94.9756%-116 - C1 -2OI5 - GLMU_ECOLI -
15 PsiBlast_PDB 94.9052%-122 - C1 -4E1K 6.4 GLMU_HAEIN
23 PsiBlast_CBE 94.8856%-112 - C1 -2OI5 9.0 GLMU_ECOLI
19 PsiBlast_PDB 94.7752%-120 - C1 -4KPZ 5.1 GLMU_HAEIN
6 PsiBlast_PDB 94.5956%-115 - C1 -2OI7 - GLMU_ECOLI -
21 PsiBlast_CBE 94.5356%-111 - C1 -2OI7 8.7 GLMU_ECOLI
22 PsiBlast_CBE 94.5256%-113 - C1 -2OI6 9.4 GLMU_ECOLI
9 PsiBlast_PDB 94.0552%-118 - C1 -2V0J - GLMU_HAEIN -
10 PsiBlast_PDB 93.9452%-119 - C1 -2V0K - GLMU_HAEIN -
7 PsiBlast_PDB 93.8352%-118 - C1 -2V0H - GLMU_HAEIN -
12 PsiBlast_PDB 93.7252%-117 - C1 -2VD4 4.0 GLMU_HAEIN
3 PsiBlast_PDB 93.6756%-116 - C1 -1HV9 - GLMU_ECOLI -
73 HHSearch 93.4253%-116 - C1 -2V0H 2.3 GLMU_HAEIN
96 Fugue 93.4156%-114 - C1 -1HV9 7.5 GLMU_ECOLI
24 PsiBlast_CBE 93.1356%-113 - C1 -1HV9 9.0 GLMU_ECOLI
74 HHSearch 85.0744%-110 - C1 -1HM9 8.3 GLMU_STRPN
95 Fugue 84.6243%-111 - C1 -1HM9 8.3 GLMU_STRPN
33 PsiBlast_CBE 84.4643%-111 - C1 -1G97 8.9 GLMU_STRPN
42 PsiBlast_CBE 83.9642%-111 - C1 -4G3Q 7.5 GLMU_MYCTU
44 PsiBlast_CBE 83.8542%-111 - C1 -3ST8 6.7 GLMU_MYCTU
38 PsiBlast_CBE 83.2042%-109 * C1 *4K6R 6.7 GLMU_MYCTO
39 PsiBlast_CBE 83.1742%-114 - C1 -4HCQ 2.7 GLMU_MYCTU
43 PsiBlast_CBE 83.1442%-113 - C1 -4G3P 8.2 ?
28 PsiBlast_CBE 82.9444%-111 - C1 -1HM9 8.3 GLMU_STRPN
41 PsiBlast_CBE 82.8342%-113 - C1 -4G3S 7.4 GLMU_MYCTU
45 PsiBlast_CBE 82.7342%-112 - C1 -3SPT 6.2 GLMU_MYCTU
27 PsiBlast_CBE 82.2944%-108 - C1 -1HM9 8.3 GLMU_STRPN
46 PsiBlast_CBE 82.2642%-111 - C1 -3DJ4 7.9 GLMU_MYCTU
40 PsiBlast_CBE 81.6942%-113 - C1 -4G87 7.2 GLMU_MYCTU
47 PsiBlast_CBE 81.6142%-111 - C1 -3D8V 4.2 GLMU_MYCTU
37 PsiBlast_CBE 80.4752%-139 - C1 -1FWY 7.5 GLMU_ECOLI
36 PsiBlast_CBE 80.1252%-135 - C1 -1FWY 7.4 GLMU_ECOLI
35 PsiBlast_CBE 79.1252%-136 - C1 -1FXJ 2.9 GLMU_ECOLI
97 Fugue 78.5152%-134 - C1 -1FXJ 2.9 GLMU_ECOLI
48 PsiBlast_CBE 76.2942%-118 - C1 -2QKX 3.9 GLMU_MYCTU
98 Fugue 66.2456%-130 - C1 -1HV9 7.5 GLMU_ECOLI