@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA5567: (2016-03-09 )
MQAATETIVAIATAQGRGGVGIVRVSGPLAGQMAVAVSGRQLKARHAHYGPFLDAGGQVIDEGLSLYFPGPNSFTGEDVLELQGHGGPVVLDLLVQRCLELGARQARPGEFSERAFLNDKLDLAQAEAIADLIEASSEQAARNALRSLQGEFSRRVHALTEQLISLRIYVEAAIDFPEEEIDFLADGHVLGLLEKVRTELSTVQREASQGALLRDGMTVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTEDHVEKIGVERALKAIGEADRVLLVVDATAPEAADPFSLWPEFLDQRPEPGKVTLIRNKADLSTESIGLEESADGHVTITLSARTGAGLELLREHLKACMGFEQTAESGFSARRRHLEALRLAGQALEHGHSQLIHNGAGELLAEDLRQAQQHLGEITGAFTPDDLLGRIFSSFCIGK

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_A_9(2GJA)
MNME_ECOLI
[Raw transfer]



GDP_A_20(2GJ8)
MNME_ECOLI
[Raw transfer]



GDP_A_20(2GJ8)
MNME_ECOLI
[Raw transfer]



GNP_A_4(3IEV)
ERA_AQUAE
[Raw transfer]



GNP_A_3(1WF3)
ERA_THET8
[Raw transfer]



GDP_B_10(2GJA)

[Raw transfer]



GDP_B_18(2GJ9)
MNME_ECOLI
[Raw transfer]



GDP_A_17(2GJ9)
MNME_ECOLI
[Raw transfer]



GDP_D_20(2GJ9)

[Raw transfer]



GDP_C_19(2GJ9)
MNME_ECOLI
[Raw transfer]



GCP_B_6(3GEI)
MNME_CHLTE
[Raw transfer]



GCP_A_4(3GEI)
MNME_CHLTE
[Raw transfer]



GDP_A_2(3GEE)
MNME_CHLTE
[Raw transfer]



GDP_A_2(3GEH)
MNME_NOSS1
[Raw transfer]



GDP_A_2(3GEH)
MNME_NOSS1
[Raw transfer]



GDP_A_2(3GEE)
MNME_CHLTE
[Raw transfer]



GDP_A_7(1MKY)
DER_THEMA
[Raw transfer]



GCP_A_2(4DCV)
DER_BACSU
[Raw transfer]



GDP_A_2(4DCT)
DER_BACSU
[Raw transfer]



GDP_A_2(4DCS)
DER_BACSU
[Raw transfer]



GDP_A_7(1MKY)
DER_THEMA
[Raw transfer]



GDP_A_2(4DCU)
DER_BACSU
[Raw transfer]
1 PsiBlast_PDB 94.5940% -88 - C3 -3GEH 6.7 MNME_NOSS1
72 HHSearch 93.7237% -78 - C3 -1XZP - MNME_THEMA -
60 Fugue 93.5936% -79 - C3 -1XZP - MNME_THEMA -
71 HHSearch 93.3840% -85 - C3 -3GEH 6.7 MNME_NOSS1
4 PsiBlast_PDB 92.3937% -79 - C3 -1XZP - MNME_THEMA -
5 PsiBlast_PDB 91.6437% -82 - C3 -1XZQ - ? -
3 PsiBlast_PDB 88.3937% -90 - C3 -3GEI 7.1 MNME_CHLTE
2 PsiBlast_PDB 88.0137% -86 - C3 -3GEE 6.4 MNME_CHLTE
21 PsiBlast_CBE 87.5037% -89 - C3 -3GEI 6.8 MNME_CHLTE
70 HHSearch 86.2836% -77 - C3 -3GEE 6.4 MNME_CHLTE
24 PsiBlast_CBE 72.1265% -94 - C3 -2GJ9 8.8 MNME_ECOLI
8 PsiBlast_PDB 72.1065% -93 - C3 -2GJA 9.6 MNME_ECOLI
7 PsiBlast_PDB 71.2965% -88 - C3 -2GJ9 8.8 MNME_ECOLI
80 HHSearch 71.2066% -87 - C3 -2GJ8 9.3 MNME_ECOLI
9 PsiBlast_PDB 70.7963% -86 - C3 -2GJ8 9.3 MNME_ECOLI
22 PsiBlast_CBE 70.5065% -89 - C3 -2GJA 9.8
25 PsiBlast_CBE 70.2765% -89 - C3 -2GJ9 8.6 MNME_ECOLI
23 PsiBlast_CBE 69.5265% -90 - C3 -2GJ9 7.9
78 HHSearch 60.4733% -92 - C3 -1MKY 7.6 DER_THEMA
77 HHSearch 59.8127% -72 * C3 *3IEV 10.7 ERA_AQUAE
10 PsiBlast_PDB 45.7140% -82 - C3 -1MKY 4.3 DER_THEMA
13 PsiBlast_PDB 41.2644% -60 - C3 -4DCT 3.8 DER_BACSU
12 PsiBlast_PDB 40.2744% -52 - C3 -4DCS 4.7 DER_BACSU
15 PsiBlast_PDB 39.4844% -51 - C3 -4DCV 4.2 DER_BACSU
14 PsiBlast_PDB 38.9744% -47 - C3 -4DCU 4.7 DER_BACSU