Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLHALCLLLLLLGSSTKAGEIIGGTECIPHSRPYMAYLEIVTSDNYLSACSGFLIRRNFVLTAAHCAGRSITVLLGAHNKTYKEDTWQKLEVEKQFIHPNYDKRLVLHDIMLLKLKEKAKLTLGVGTLPLSANFNFIPPGRMCRAVGWGRTNVNEPASDTLQEVKMRLQEPQSCKHFTSFQHKSQLCVGNPKKMQNVYKGDSGGPLLCAGIAQGIASYVHPNAKPPAVFTRISHYRPWINKILREN
2RDL Chain:A ((1-226))
---------------------IIGGTECRPHARPYMAYLEIVTPENHLSACSGFLIRRNFVMTAAHCAGRSITVLLGAHNKKVKEDTWQKLEVEKQFPHPKYDDRLVLNDIMLLKLKEKANLTLGVGTLPISAKSNSIPPGRVCRAVGWGRTNVNEPPSDTLQEVKMRILDPQACKHFEDFHQEPQLCVGNPKKIRNVYKGDSGGPLLCAGIAQGIASYVLRNAKPPSVFTRISHYRPWINKILREN
General information:
TITO was launched using:
RESULT:
Template:
2RDL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -169118 for 1949 contacts (-86.8/contact) +
2D Compatibility (PS) -24187 + (NN) -9115 + (LL) 1744
1D Compatibility (HY) -28000 + (ID) 9600
Total energy: -238276.0 ( -122.26 by residue)
QMean score : 0.450
(partial model without unconserved sides chains):
PDB file :
Tito_2RDL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RDL-query.scw
PDB file :
Tito_Scwrl_2RDL.pdb
: